dolfin team mailing list archive

["Johannes Ring" <johannr@xxxxxxxxx>]

On Fri, September 19, 2008 10:44, Johannes Ring wrote:
> On Fri, September 19, 2008 10:28, Garth N. Wells wrote:
>>
>>
>> Johannes Ring wrote:
>>> On Fri, September 19, 2008 10:19, Niclas Jansson wrote:
>>>> Johannes Ring wrote:
>>>>> On Thu, September 18, 2008 19:43, Anders Logg wrote:
>>>>>> On Thu, Sep 18, 2008 at 06:52:30PM +0200, Johannes Ring wrote:
>>>>>>> On Thu, September 18, 2008 18:35, Anders Logg wrote:
>>>>>>>> We need to add a test/pkgconfig-generator for ParMETIS.
>>>>>>>>
>>>>>>>> I can build the test program in sandbox/passembly but I need to
>>>>>>>> add
>>>>>>>>
>>>>>>>>   customCxxFlags=-DHAS_PARMETIS=1
>>>>>>>>
>>>>>>>> to scons when building DOLFIN and then manually add
>>>>>>>>
>>>>>>>>   -lparmetis -lmetis
>>>>>>>>
>>>>>>>> when linking the demo.
>>>>>>>>
>>>>>>>> Can someone who knows the build system better add this?
>>>>>>> I can do that.
>>>>>> Thanks.
>>>>>>
>>>>>>> Do you use the libparmetis-dev package that comes with
>>>>>>> Ubuntu or do you build ParMETIS yourself?
>>>>>> I use the Ubuntu package.
>>>>> I have the pkg-config generator for ParMETIS ready but building
>>>>> DOLFIN
>>>>> fails with the following error message:
>>>>>
>>>>> mpic++ -o dolfin/mesh/MeshPartition.os -c -Wall -pipe -ansi -DDEBUG
>>>>> -g
>>>>> -Werror -DNDEBUG -O2 -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK
>>>>> -DPACKAGE_VERSION=\"0.8.0\" -DHAS_PETSC=1 -DHAS_SLEPC=1
>>>>> -DHAS_SCOTCH=1
>>>>> -DHAS_UMFPACK=1 -DHAS_GTS=1 -DHAS_TRILINOS=1 -DHAS_CHOLMOD=1
>>>>> -DHAS_MTL4=1
>>>>> -DHAS_PARMETIS=1 -fPIC -I. -I/usr/local/include
>>>>> -I/usr/include/libxml2
>>>>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>>>>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>>>>> -I/home/johannr/src/slepc-2.3.3
>>>>> -I/home/johannr/src/slepc-2.3.3/include
>>>>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>>>>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>>>>> -I/home/johannr/src/scotch_5.0/bin -I/usr/include/suitesparse
>>>>> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include
>>>>> -I/home/johannr/src/trilinos-8.0.3/local/include
>>>>> -I/usr/include/suitesparse -I/home/johannr/src/svn/mtl4
>>>>> dolfin/mesh/MeshPartition.cpp
>>>>> dolfin/mesh/MeshPartition.cpp: In static member function ?static void
>>>>> dolfin::MeshPartition::partitionGeom(dolfin::Mesh&,
>>>>> dolfin::MeshFunction<unsigned int>&)?:
>>>>> dolfin/mesh/MeshPartition.cpp:102: error: ?idxtype? was not declared
>>>>> in
>>>>> this scope
>>>>> dolfin/mesh/MeshPartition.cpp:102: error: ?vtxdist? was not declared
>>>>> in
>>>>> this scope
>>>>> dolfin/mesh/MeshPartition.cpp:102: error: expected type-specifier
>>>>> before
>>>>> ?idxtype?
>>>>> dolfin/mesh/MeshPartition.cpp:102: error: expected `;' before
>>>>> ?idxtype?
>>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected type-specifier
>>>>> before
>>>>> ?idxtype?
>>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `>' before
>>>>> ?idxtype?
>>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `(' before
>>>>> ?idxtype?
>>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `)' before ?;?
>>>>> token
>>>>> dolfin/mesh/MeshPartition.cpp:117: error: expected `;' before ?gdim?
>>>>> dolfin/mesh/MeshPartition.cpp:118: error: ?part? was not declared in
>>>>> this
>>>>> scope
>>>>> dolfin/mesh/MeshPartition.cpp:118: error: expected type-specifier
>>>>> before
>>>>> ?idxtype?
>>>>> dolfin/mesh/MeshPartition.cpp:118: error: expected `;' before
>>>>> ?idxtype?
>>>>> dolfin/mesh/MeshPartition.cpp:119: error: ?gdim? was not declared in
>>>>> this
>>>>> scope
>>>>> dolfin/mesh/MeshPartition.cpp:134: error: ?ParMETIS_V3_PartGeom? was
>>>>> not
>>>>> declared in this scope
>>>>> dolfin/mesh/MeshPartition.cpp:143: error: type ?<type error>?
>>>>> argument
>>>>> given to ?delete?, expected pointer
>>>>> dolfin/mesh/MeshPartition.cpp:144: error: type ?<type error>?
>>>>> argument
>>>>> given to ?delete?, expected pointer
>>>>> scons: *** [dolfin/mesh/MeshPartition.os] Error 1
>>>>> scons: building terminated because of errors.
>>>>>
>>>>> Any ideas?
>>>>>
>>>>> Johannes
>>>>>
>>>> Seams like it doesn't find parmetis.h
>>>
>>> Yes, it seems so, but parmetis.h is located under /usr/include so it
>>> can't
>>> be missed. And it doesn't fail on this part of MeshPartition.cpp:
>>>
>>> #ifdef HAS_PARMETIS
>>> #include <parmetis.h>
>>> #endif
>>>
>>
>> Should it be
>>
>>    extern "C"
>>    {
>>    #ifdef HAS_PARMETIS
>>    #include <parmetis.h>
>>    #endif
>>    }
>> ?
>
> I tried it but it gave me the same error message.

It seems to be a problem with SCOTCH. DOLFIN builds fine when I disable
SCOTCH.

Johannes