dolfin team mailing list archive

["Johannes Ring" <johannr@xxxxxxxxx>]

On Fri, September 19, 2008 10:28, Garth N. Wells wrote:
>
>
> Johannes Ring wrote:
>> On Fri, September 19, 2008 10:19, Niclas Jansson wrote:
>>> Johannes Ring wrote:
>>>> On Thu, September 18, 2008 19:43, Anders Logg wrote:
>>>>> On Thu, Sep 18, 2008 at 06:52:30PM +0200, Johannes Ring wrote:
>>>>>> On Thu, September 18, 2008 18:35, Anders Logg wrote:
>>>>>>> We need to add a test/pkgconfig-generator for ParMETIS.
>>>>>>>
>>>>>>> I can build the test program in sandbox/passembly but I need to add
>>>>>>>
>>>>>>>   customCxxFlags=-DHAS_PARMETIS=1
>>>>>>>
>>>>>>> to scons when building DOLFIN and then manually add
>>>>>>>
>>>>>>>   -lparmetis -lmetis
>>>>>>>
>>>>>>> when linking the demo.
>>>>>>>
>>>>>>> Can someone who knows the build system better add this?
>>>>>> I can do that.
>>>>> Thanks.
>>>>>
>>>>>> Do you use the libparmetis-dev package that comes with
>>>>>> Ubuntu or do you build ParMETIS yourself?
>>>>> I use the Ubuntu package.
>>>> I have the pkg-config generator for ParMETIS ready but building DOLFIN
>>>> fails with the following error message:
>>>>
>>>> mpic++ -o dolfin/mesh/MeshPartition.os -c -Wall -pipe -ansi -DDEBUG -g
>>>> -Werror -DNDEBUG -O2 -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK
>>>> -DPACKAGE_VERSION=\"0.8.0\" -DHAS_PETSC=1 -DHAS_SLEPC=1 -DHAS_SCOTCH=1
>>>> -DHAS_UMFPACK=1 -DHAS_GTS=1 -DHAS_TRILINOS=1 -DHAS_CHOLMOD=1
>>>> -DHAS_MTL4=1
>>>> -DHAS_PARMETIS=1 -fPIC -I. -I/usr/local/include -I/usr/include/libxml2
>>>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>>>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>>>> -I/home/johannr/src/slepc-2.3.3
>>>> -I/home/johannr/src/slepc-2.3.3/include
>>>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>>>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>>>> -I/home/johannr/src/scotch_5.0/bin -I/usr/include/suitesparse
>>>> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include
>>>> -I/home/johannr/src/trilinos-8.0.3/local/include
>>>> -I/usr/include/suitesparse -I/home/johannr/src/svn/mtl4
>>>> dolfin/mesh/MeshPartition.cpp
>>>> dolfin/mesh/MeshPartition.cpp: In static member function ?static void
>>>> dolfin::MeshPartition::partitionGeom(dolfin::Mesh&,
>>>> dolfin::MeshFunction<unsigned int>&)?:
>>>> dolfin/mesh/MeshPartition.cpp:102: error: ?idxtype? was not declared
>>>> in
>>>> this scope
>>>> dolfin/mesh/MeshPartition.cpp:102: error: ?vtxdist? was not declared
>>>> in
>>>> this scope
>>>> dolfin/mesh/MeshPartition.cpp:102: error: expected type-specifier
>>>> before
>>>> ?idxtype?
>>>> dolfin/mesh/MeshPartition.cpp:102: error: expected `;' before
>>>> ?idxtype?
>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected type-specifier
>>>> before
>>>> ?idxtype?
>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `>' before
>>>> ?idxtype?
>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `(' before
>>>> ?idxtype?
>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `)' before ?;?
>>>> token
>>>> dolfin/mesh/MeshPartition.cpp:117: error: expected `;' before ?gdim?
>>>> dolfin/mesh/MeshPartition.cpp:118: error: ?part? was not declared in
>>>> this
>>>> scope
>>>> dolfin/mesh/MeshPartition.cpp:118: error: expected type-specifier
>>>> before
>>>> ?idxtype?
>>>> dolfin/mesh/MeshPartition.cpp:118: error: expected `;' before
>>>> ?idxtype?
>>>> dolfin/mesh/MeshPartition.cpp:119: error: ?gdim? was not declared in
>>>> this
>>>> scope
>>>> dolfin/mesh/MeshPartition.cpp:134: error: ?ParMETIS_V3_PartGeom? was
>>>> not
>>>> declared in this scope
>>>> dolfin/mesh/MeshPartition.cpp:143: error: type ?<type error>? argument
>>>> given to ?delete?, expected pointer
>>>> dolfin/mesh/MeshPartition.cpp:144: error: type ?<type error>? argument
>>>> given to ?delete?, expected pointer
>>>> scons: *** [dolfin/mesh/MeshPartition.os] Error 1
>>>> scons: building terminated because of errors.
>>>>
>>>> Any ideas?
>>>>
>>>> Johannes
>>>>
>>> Seams like it doesn't find parmetis.h
>>
>> Yes, it seems so, but parmetis.h is located under /usr/include so it
>> can't
>> be missed. And it doesn't fail on this part of MeshPartition.cpp:
>>
>> #ifdef HAS_PARMETIS
>> #include <parmetis.h>
>> #endif
>>
>
> Should it be
>
>    extern "C"
>    {
>    #ifdef HAS_PARMETIS
>    #include <parmetis.h>
>    #endif
>    }
> ?

I tried it but it gave me the same error message.

Johannes

> Garth
>
>
>
>> Johannes
>>
>>> Niclas
>>>
>>>>> --
>>>>> Anders
>>>>> _______________________________________________
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>>>>>
>>>>
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>>
>>
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>
>