dolfin team mailing list archive

[Andre Massing <massing@xxxxxxxxx>]

Dimitris Tsarouchas wrote:
> On 02/03/10 12:29, Garth N. Wells wrote:
> > Andre Massing wrote:
> >   
> > > Harish Narayanan wrote:
> > >     
> > > > On 3/2/10 12:11 PM, Garth N. Wells wrote:
> > > >       
> > > > > Andre Massing wrote:
> > > > >         
> > > > > > Hi,
> > > > > >
> > > > > > just updated  my DOLFIN to the newest trunk and now I am running into
> > > > > > a missing header file problem during compilation:
> > > > > >
> > > > > > mpic++ -o dolfin/la/EpetraFactory.os -c -Wall -pipe -ansi
> > > > > > -BOOST_UBLAS_NDEBUG -DDEBUG -g -O2 -Werror -DHAS_MPI=1
> > > > > > -DMPICH_IGNORE_CXX_SEEK -DPACKAGE_VERSION=\"0.9.7\" -DHAS_CGAL=1
> > > > > > -DHAS_TRILINOS=1 -DHAS_UMFPACK=1 -DHAS_CHOLMOD=1 -DHAS_PARMETIS=1
> > > > > > -DHAS_LAPACK=1 -DHAS_SLEPC=1 -DHAS_ZLIB=1 -DHAS_MTL4=1 -DHAS_PETSC=1
> > > > > > -DHAS_GMP=1 -fno-strict-aliasing -frounding-math -DMTL_HAS_BLAS -fPIC
> > > > > > -I. -I/home/andre/local/include -I/usr/include -I/usr/include
> > > > > > -I/usr/include -I/usr/include/libxml2 -I/home/andre/local/include
> > > > > > -I/home/andre/local/include -I/usr/include/suitesparse
> > > > > > -I/usr/include/suitesparse -I/usr/include -I/home/andre/local
> > > > > > -I/home/andre/local/include -I/home/andre/local/include
> > > > > > -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include
> > > > > > -I/home/andre/homebase/software/packages/src/fenics-unstable/mtl4
> > > > > > -I/usr/include -I/home/andre/local/include 
> > > > > > -I/home/andre/local/include
> > > > > > -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include
> > > > > > dolfin/la/EpetraFactory.cpp
> > > > > >
> > > > > > dolfin/la/EpetraFactory.cpp:9:28: error: Epetra_MpiComm.h: No such 
> > > > > > file
> > > > > > or directory
> > > > > > dolfin/la/EpetraFactory.cpp: In constructor
> > > > > > ‘dolfin::EpetraFactory::EpetraFactory()’:
> > > > > > dolfin/la/EpetraFactory.cpp:32: error: invalid use of incomplete type
> > > > > > ‘struct Epetra_MpiComm’
> > > > > > dolfin/la/EpetraFactory.h:19: error: forward declaration of ‘struct
> > > > > > Epetra_MpiComm’
> > > > > > cc1plus: warnings being treated as errors
> > > > > > dolfin/la/EpetraFactory.cpp: In destructor ‘virtual
> > > > > > dolfin::EpetraFactory::~EpetraFactory()’:
> > > > > > dolfin/la/EpetraFactory.cpp:38: error: possible problem detected in
> > > > > > invocation of delete operator:
> > > > > > dolfin/la/EpetraFactory.cpp:38: error: invalid use of incomplete type
> > > > > > ‘struct Epetra_MpiComm’
> > > > > > dolfin/la/EpetraFactory.h:19: error: forward declaration of ‘struct
> > > > > > Epetra_MpiComm’
> > > > > > dolfin/la/EpetraFactory.cpp:38: note: neither the destructor nor the
> > > > > > class-specific operator delete will be called, even if they are
> > > > > > declared
> > > > > > when the class is defined.
> > > > > >
> > > > > >
> > > > > > The required header was not installed.
> > > > > > I used the default dorsal trilinos installation, so do I have to 
> > > > > > tweak
> > > > > > the installation to get these header files as well? Or anything 
> > > > > > else I
> > > > > > have to account for?
> > > > > >
> > > > > >            
> > > > > Looks like Trilinos was not configured with MPI. The scons test for
> > > > > Trilinos need to be updated.
> > > > >          
> > > > I think Dimitris mentioned that he had observed something like this and
> > > > has a patch. Dimitris?
> > > >
> > > > Harish
> > > >        
> Trilinos needs to be built with MPI as Garth said. If you are using 
> dorsal you can just add [ --enable-mpi CXX="mpiCC" ] in the trilinos 
> package and that should do the trick.

Oh great, I was just starting to play around with the configure options
to find out the right combination of options. That saves me quite some 
time, thanks for sharing!

> Dimitris
> > > BTW, we don't use the newest release 10.0 of trilinos, do we? That
> > > changed also the build system to cmake.
> > >
> > >      
> > I use 10.0.
> >
> > Garth
> >
> >   
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> >
> >
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>
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