dolfin team mailing list archive

[Patrick Riesen <priesen@xxxxxxxxxxxxxxx>]

Johannes Ring wrote:
> On Thu, Apr 15, 2010 at 6:53 PM, Riesen  Patrick
> <priesen@xxxxxxxxxxxxxxx> wrote:
> > hi,
> >
> > ldd on libdolfin.so gives
> >
> >
> >        linux-vdso.so.1 =>  (0x00007fffe6cd6000)
> >        libboost_program_options.so.1.40.0 => /scratch/priesen/FEniCS/build/lib/libboost_program_options.so.1.40.0 (0x00007f2b6926d000)
> >        libboost_filesystem.so.1.40.0 => /scratch/priesen/FEniCS/build/lib/libboost_filesystem.so.1.40.0 (0x00007f2b69059000)
> >        libxml2.so.2 => /usr/lib/libxml2.so.2 (0x00007f2b68ccb000)
> >        liblapack.so.3gf => /usr/lib/atlas/liblapack.so.3gf (0x00007f2b681de000)
> >        libblas.so.3gf => /usr/lib/atlas/libblas.so.3gf (0x00007f2b67821000)
> >        libz.so.1 => /usr/lib/libz.so.1 (0x00007f2b6760a000)
> > [....]
> >
> > so the boost shared libs are loaded, but there's another boost lib as
> >
> > libboost_thread-gcc42-mt-1_34_1.so.1.34.1 => /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1 (0x00007ff99fc0d000)
>
> I think it is CGAL that links to that library. Try to rebuild CGAL
> with these two options:
>
>   -D Boost_INCLUDE_DIR:PATH=/scratch/priesen/FEniCS/build/include
>   -D Boost_LIBRARY_DIRS:FILEPATH=/scratch/priesen/FEniCS/build/lib
>
> Johannes

strike! yes, my cgal cmake cache shows that's its linked to the wrong 
boost. i'll rebuild cgal correctly and hope that will fix the problem.

thank you very much, Johannes,

best regards,
patrick


> > this is suspicious, since it does not belong to the actual boost1.4.0 i have in my FEniCS/build dir
> > don't know how it found this... i have set the BOOST_DIR variable correctly to .../FEniCS/build.
> > hm....
> >
> >
> >
> >
> > -----Original Message-----
> > From: Andy Ray Terrel [mailto:andy.terrel@xxxxxxxxx]
> > Sent: Thu 15.04.2010 16:26
> > To: Riesen  Patrick
> > Cc: DOLFIN Mailing List
> > Subject: Re: [Dolfin] linking error
> >
> > Can you do ldd (otool -L on Mac) on the object file to see if boost's
> > shared library is being loaded. It looks like either an older version
> > of boost or a problem finding the shared library.
> >
> > aterrel@aterrel:~/workspace/dolfin/demo/pde/stokes/taylor-hood/cpp$
> > otool -L ~/workspace/lib/libdolfin.dylib
> > /Users/aterrel/workspace/lib/libdolfin.dylib:
> >        dolfin/libdolfin.dylib (compatibility version 0.0.0, current version 0.0.0)
> >        /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
> > (compatibility version 1.0.0, current version 268.0.1)
> >        /sw/lib/libboost_program_options-1_35.dylib (compatibility version
> > 1.35.0, current version 1.35.0)
> >        /sw/lib/libboost_filesystem-1_35.dylib (compatibility version 1.35.0,
> > current version 1.35.0)
> >        /sw/lib/libboost_system-1_35.dylib (compatibility version 1.35.0,
> > current version 1.35.0)
> >        /sw/lib/libxml2.2.dylib (compatibility version 9.0.0, current version 9.32.0)
> >        /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.3)
> >        /usr/local/lib/libmpi_cxx.0.dylib (compatibility version 1.0.0,
> > current version 1.0.0)
> >        /usr/local/lib/libmpi.0.dylib (compatibility version 1.0.0, current
> > version 1.1.0)
> >        /usr/local/lib/libopen-rte.0.dylib (compatibility version 1.0.0,
> > current version 1.0.0)
> >        /usr/local/lib/libopen-pal.0.dylib (compatibility version 1.0.0,
> > current version 1.0.0)
> >        /usr/lib/libutil.dylib (compatibility version 1.0.0, current version 1.0.0)
> >        /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.9.0)
> >        /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
> > version 125.0.1)
> >
> >
> > -- Andy
> >
> > On Thu, Apr 15, 2010 at 8:57 AM, Patrick Riesen <priesen@xxxxxxxxxxxxxxx> wrote:
> > > hello, i just made a bzr pull for all fenics packages.
> > >
> > > dolfin compiled and linked without problem. but when compiling any of the
> > > demos i get the following linking error:
> > >
> > > mpic++ -o demo -Wl,-rpath,/scratch/priesen/FEniCS/build/lib main.o
> > > -L/scratch/priesen/FEniCS/build/lib -L/usr/lib/atlas -ldolfin
> > > -lboost_program_options -lboost_filesystem -lxml2 -lz -lumfpack -lamd
> > > -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc
> > > -lX11 -lCGAL -llapack -lblas
> > > /scratch/priesen/FEniCS/build/lib/libdolfin.so: undefined reference to
> > > `boost::detail::set_tss_data(void const*,
> > > boost::shared_ptr<boost::detail::tss_cleanup_function>, void*, bool)'
> > > /scratch/priesen/FEniCS/build/lib/libdolfin.so: undefined reference to
> > > `boost::detail::get_tss_data(void const*)'
> > > collect2: ld returned 1 exit status
> > > scons: *** [demo] Error 1
> > > scons: building terminated because of errors.
> > >
> > >
> > > help appreciated :-)
> > >
> > > best regards,
> > >
> > > patrick
> > >
> > > _______________________________________________
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