dolfin team mailing list archive

[Johannes Ring <johannr@xxxxxxxxx>]

Public bug reported:

Hi,

PETSc 3.1 was released earlier this year (end of March) but it does not
yet work with DOLFIN. It would be nice to add support for this version
of PETSc. Here is the error message on the buildbot (linux64-exp):

mpic++ -o dolfin/la/PETScLUSolver.os -c -Wall -pipe -ansi -BOOST_UBLAS_NDEBUG -DDEBUG -g -O2 -Werror -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK -DPACKAGE_VERSION=\"0.9.7\" -DHAS_LAPACK=1 -DHAS_TRILINOS=1 -DHAS_ZLIB=1 -DHAS_UMFPACK=1 -DHAS_PETSC=1 -DHAS_CHOLMOD=1 -DHAS_CGAL=1 -DHAS_SCOTCH=1 -DHAS_PARMETIS=1 -fno-strict-aliasing -frounding-math -fPIC -I. -I/work/jhbuildbot/fenics/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -I/work/jhbuildbot/local/include -I/usr/include -I/work/jhbuildbot/local/include/trilinos -I/usr/include -I/usr/include/suitesparse -I/work/jhbuildbot/src/petsc-3.1-p2/local/linux-gnu-cxx-debug/include -I/work/jhbuildbot/src/petsc-3.1-p2/local/include -I/work/jhbuildbot/local/include -I/work/jhbuildbot/local/lib -I/usr/include/suitesparse -I/work/jhbuildbot/src/CGAL-3.5.1/Build/local/include -I/work/jhbuildbot/src/scotch_5.1/local/include -I/usr/include dolfin/la/PETScLUSolver.cpp
dolfin/la/PETScLUSolver.cpp: In member function ‘void dolfin::PETScLUSolver::init()’:
dolfin/la/PETScLUSolver.cpp:176: error: ‘PCFactorSetShiftNonzero’ was not declared in this scope

PETSc 3.1 was also recently introduced in Debian replacing the PETSc 3.0
packages. DOLFIN in Debian is therefore currently broken:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=583419

** Affects: dolfin
     Importance: Undecided
         Status: Confirmed

-- 
Please add support for PETSc 3.1 
https://bugs.launchpad.net/bugs/587826
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Status in DOLFIN: Confirmed

Bug description:
Hi,

PETSc 3.1 was released earlier this year (end of March) but it does not yet work with DOLFIN. It would be nice to add support for this version of PETSc. Here is the error message on the buildbot (linux64-exp):

mpic++ -o dolfin/la/PETScLUSolver.os -c -Wall -pipe -ansi -BOOST_UBLAS_NDEBUG -DDEBUG -g -O2 -Werror -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK -DPACKAGE_VERSION=\"0.9.7\" -DHAS_LAPACK=1 -DHAS_TRILINOS=1 -DHAS_ZLIB=1 -DHAS_UMFPACK=1 -DHAS_PETSC=1 -DHAS_CHOLMOD=1 -DHAS_CGAL=1 -DHAS_SCOTCH=1 -DHAS_PARMETIS=1 -fno-strict-aliasing -frounding-math -fPIC -I. -I/work/jhbuildbot/fenics/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -I/work/jhbuildbot/local/include -I/usr/include -I/work/jhbuildbot/local/include/trilinos -I/usr/include -I/usr/include/suitesparse -I/work/jhbuildbot/src/petsc-3.1-p2/local/linux-gnu-cxx-debug/include -I/work/jhbuildbot/src/petsc-3.1-p2/local/include -I/work/jhbuildbot/local/include -I/work/jhbuildbot/local/lib -I/usr/include/suitesparse -I/work/jhbuildbot/src/CGAL-3.5.1/Build/local/include -I/work/jhbuildbot/src/scotch_5.1/local/include -I/usr/include dolfin/la/PETScLUSolver.cpp
dolfin/la/PETScLUSolver.cpp: In member function ‘void dolfin::PETScLUSolver::init()’:
dolfin/la/PETScLUSolver.cpp:176: error: ‘PCFactorSetShiftNonzero’ was not declared in this scope

PETSc 3.1 was also recently introduced in Debian replacing the PETSc 3.0 packages. DOLFIN in Debian is therefore currently broken: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=583419