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[Alexander Jarosch <717110@xxxxxxxxxxxxxxxxxx>]

Public bug reported:

Hi all,

when I run dolfin-convert in a shell I get the following output:

Traceback (most recent call last):
  File "/usr/bin/dolfin-convert", line 26, in <module>
    from dolfin.mesh import meshconvert
  File "/usr/lib/python2.6/dist-packages/dolfin/__init__.py", line 13, in <module>
    import dolfin.cpp as cpp
  File "/usr/lib/python2.6/dist-packages/dolfin/cpp.py", line 28, in <module>
    _cpp = swig_import_helper()
  File "/usr/lib/python2.6/dist-packages/dolfin/cpp.py", line 24, in swig_import_helper
    _mod = imp.load_module('_cpp', fp, pathname, description)
ImportError: /usr/lib/libhdf5_fortran.so.6: undefined symbol: H5Pset_dxpl_mpio

I run Ubuntu 10.10 and the latest Fenics install from ppa:fenics/ppa:
fenics 10.09-2~ppa1~maverick1 and dolfin-0.9.9-4~ppa2~maverik1. Seems to
be a missing symbol definition in libhdf5_fortran.so.6 from the
libhdf5-openmpi-1.8.4 package.

Please fix and let me know if I can help

Cheers,
Alex

** Affects: dolfin
     Importance: Undecided
         Status: New

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https://bugs.launchpad.net/bugs/717110

Title:
  dolfin-convert crashes due to libhdf5_fortran problem

Status in DOLFIN:
  New

Bug description:
  Hi all,

  when I run dolfin-convert in a shell I get the following output:

  Traceback (most recent call last):
    File "/usr/bin/dolfin-convert", line 26, in <module>
      from dolfin.mesh import meshconvert
    File "/usr/lib/python2.6/dist-packages/dolfin/__init__.py", line 13, in <module>
      import dolfin.cpp as cpp
    File "/usr/lib/python2.6/dist-packages/dolfin/cpp.py", line 28, in <module>
      _cpp = swig_import_helper()
    File "/usr/lib/python2.6/dist-packages/dolfin/cpp.py", line 24, in swig_import_helper
      _mod = imp.load_module('_cpp', fp, pathname, description)
  ImportError: /usr/lib/libhdf5_fortran.so.6: undefined symbol: H5Pset_dxpl_mpio

  I run Ubuntu 10.10 and the latest Fenics install from ppa:fenics/ppa:
  fenics 10.09-2~ppa1~maverick1 and dolfin-0.9.9-4~ppa2~maverik1. Seems
  to be a missing symbol definition in libhdf5_fortran.so.6 from the
  libhdf5-openmpi-1.8.4 package.

  Please fix and let me know if I can help

  Cheers,
  Alex