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Message #21731
[Bug 725565] [NEW] python poisson demo crashes
Public bug reported:
Just installed 0.9.10 both binary (maverick-64), and using dorsal. In
both cases c++ demos work but not python.
osman@osman-AV019AA-ABA-p6228p:~/Work/FEniCS/share/dolfin/demo/pde/poisson/python$ python demo.py
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
Calling FFC just-in-time (JIT) compiler, this may take some time.
In instant.recompile: The module did not compile, see '/tmp/tmpRiukAp2011-2-26-08-41_instant/form_0d8a1678676585f3a355ea7f390d816ef44e5c7b/compile.log'
Traceback (most recent call last):
File "demo.py", line 45, in <module>
problem = VariationalProblem(a, L, bc)
File "/usr/lib/python2.6/dist-packages/dolfin/fem/variationalproblem.py", line 52, in __init__
self.a = Form(a, form_compiler_parameters=form_compiler_parameters)
File "/usr/lib/python2.6/dist-packages/dolfin/fem/form.py", line 34, in __init__
(self._compiled_form, module, self.form_data) = jit(form, form_compiler_parameters, common_cell)
File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", line 47, in mpi_jit
return local_jit(*args, **kwargs)
File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", line 114, in jit
return jit_compile(form, parameters=p, common_cell=common_cell)
File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 64, in jit
return jit_form(object, parameters, common_cell)
File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 134, in jit_form
cache_dir = cache_dir)
File "/usr/local/lib/python2.6/dist-packages/ufc_utils/build.py", line 63, in build_ufc_module
**kwargs)
File "/usr/local/lib/python2.6/dist-packages/instant/build.py", line 463, in build_module
recompile(modulename, module_path, setup_name, new_compilation_checksum)
File "/usr/local/lib/python2.6/dist-packages/instant/build.py", line 101, in recompile
"compile, see '%s'" % compile_log_filename)
File "/usr/local/lib/python2.6/dist-packages/instant/output.py", line 49, in instant_error
raise RuntimeError(text)
RuntimeError: In instant.recompile: The module did not compile, see '/tmp/tmpRiukAp2011-2-26-08-41_instant/form_0d8a1678676585f3a355ea7f390d816ef44e5c7b/compile.log'
osman@osman-AV019AA-ABA-p6228p:~/Work/FEniCS/share/dolfin/demo/pde/poisson/python$ vi /tmp/tmpRiukAp2011-2-26-08-41_instant/form_0d8a1678676585f3a355ea7f390d816ef44e5c7b/compile.log
the tmp file contains:
form_0d8a1678676585f3a355ea7f390d816ef44e5c7b.i:31: Error: Unable to find 'swig/ufc.i'
running build_ext
building '_form_0d8a1678676585f3a355ea7f390d816ef44e5c7b' extension
creating build
creating build/temp.linux-x86_64-2.6
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/local/include -I/usr/include -I/usr/include/python2.6 -c form_0d8a1678676585f3a355ea7f390d816ef44e5c7b_wrap.cxx -o build/temp.linux-x86_64-2.6/form_0d8a1678676585f3a355ea7f390d816ef44e5c7b_wrap.o -O0
gcc: form_0d8a1678676585f3a355ea7f390d816ef44e5c7b_wrap.cxx: No such file or directory
gcc: no input files
error: command 'gcc' failed with exit status 1
I could not find ufc.i in python2.6/dist-packages/instant/swig. only
numpy.i is there.
** Affects: dolfin
Importance: Undecided
Status: New
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https://bugs.launchpad.net/bugs/725565
Title:
python poisson demo crashes
Status in DOLFIN:
New
Bug description:
Just installed 0.9.10 both binary (maverick-64), and using dorsal. In
both cases c++ demos work but not python.
osman@osman-AV019AA-ABA-p6228p:~/Work/FEniCS/share/dolfin/demo/pde/poisson/python$ python demo.py
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
Calling FFC just-in-time (JIT) compiler, this may take some time.
In instant.recompile: The module did not compile, see '/tmp/tmpRiukAp2011-2-26-08-41_instant/form_0d8a1678676585f3a355ea7f390d816ef44e5c7b/compile.log'
Traceback (most recent call last):
File "demo.py", line 45, in <module>
problem = VariationalProblem(a, L, bc)
File "/usr/lib/python2.6/dist-packages/dolfin/fem/variationalproblem.py", line 52, in __init__
self.a = Form(a, form_compiler_parameters=form_compiler_parameters)
File "/usr/lib/python2.6/dist-packages/dolfin/fem/form.py", line 34, in __init__
(self._compiled_form, module, self.form_data) = jit(form, form_compiler_parameters, common_cell)
File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", line 47, in mpi_jit
return local_jit(*args, **kwargs)
File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", line 114, in jit
return jit_compile(form, parameters=p, common_cell=common_cell)
File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 64, in jit
return jit_form(object, parameters, common_cell)
File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 134, in jit_form
cache_dir = cache_dir)
File "/usr/local/lib/python2.6/dist-packages/ufc_utils/build.py", line 63, in build_ufc_module
**kwargs)
File "/usr/local/lib/python2.6/dist-packages/instant/build.py", line 463, in build_module
recompile(modulename, module_path, setup_name, new_compilation_checksum)
File "/usr/local/lib/python2.6/dist-packages/instant/build.py", line 101, in recompile
"compile, see '%s'" % compile_log_filename)
File "/usr/local/lib/python2.6/dist-packages/instant/output.py", line 49, in instant_error
raise RuntimeError(text)
RuntimeError: In instant.recompile: The module did not compile, see '/tmp/tmpRiukAp2011-2-26-08-41_instant/form_0d8a1678676585f3a355ea7f390d816ef44e5c7b/compile.log'
osman@osman-AV019AA-ABA-p6228p:~/Work/FEniCS/share/dolfin/demo/pde/poisson/python$ vi /tmp/tmpRiukAp2011-2-26-08-41_instant/form_0d8a1678676585f3a355ea7f390d816ef44e5c7b/compile.log
the tmp file contains:
form_0d8a1678676585f3a355ea7f390d816ef44e5c7b.i:31: Error: Unable to find 'swig/ufc.i'
running build_ext
building '_form_0d8a1678676585f3a355ea7f390d816ef44e5c7b' extension
creating build
creating build/temp.linux-x86_64-2.6
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/local/include -I/usr/include -I/usr/include/python2.6 -c form_0d8a1678676585f3a355ea7f390d816ef44e5c7b_wrap.cxx -o build/temp.linux-x86_64-2.6/form_0d8a1678676585f3a355ea7f390d816ef44e5c7b_wrap.o -O0
gcc: form_0d8a1678676585f3a355ea7f390d816ef44e5c7b_wrap.cxx: No such file or directory
gcc: no input files
error: command 'gcc' failed with exit status 1
I could not find ufc.i in python2.6/dist-packages/instant/swig. only
numpy.i is there.
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References