dolfin team mailing list archive

[Johannes Ring <johannr@xxxxxxxxx>]

The linux64-exp buildbot hangs on SystemAssembler test when running
without PETSc:

  http://www.fenicsproject.org:8080/builders/dolfin-linux64-exp/builds/925/steps/dolfin%20check/logs/stdio

I get the error below when running the test manually on the buildbot.

Johannes

johannr@limbo:python$ mpirun -np 3 python SystemAssembler.py
Process 0: DOLFIN_NOPLOT set, plotting disabled.

Testing class SystemAssembler
-----------------------------
Process 0: Number of global vertices: 125
Process 0: Number of global cells: 384
Process 1: DOLFIN_NOPLOT set, plotting disabled.

Testing class SystemAssembler
-----------------------------
Process 2: DOLFIN_NOPLOT set, plotting disabled.

Testing class SystemAssembler
-----------------------------
Process 0: Partitioned mesh, edge cut is 59.
Process 1: Partitioned mesh, edge cut is 59.
Process 2: Partitioned mesh, edge cut is 59.
EFIXME: This unit test does not work in parallel, skipping
.EFIXME: This unit test does not work in parallel, skipping
.FFIXME: This unit test does not work in parallel, skipping
.Process 1: Partitioned mesh, edge cut is 59.
Process 0: Number of global vertices: 125
Process 0: Number of global cells: 384
Process 0: Partitioned mesh, edge cut is 59.
Process 2: Partitioned mesh, edge cut is 59.
EE
======================================================================
ERROR: test_cell_assembly (__main__.TestSystemAssembler)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "SystemAssembler.py", line 51, in test_cell_assembly
    A, b = assemble_system(a, L)
  File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/fem/assembling.py",
line 283, in assemble_system
    finalize_tensor)
  File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/cpp.py",
line 18382, in assemble_system
    return _cpp.assemble_system(*args)
RuntimeError:

*** -------------------------------------------------------------------------
*** DOLFIN encountered an error. If you are not able to resolve this issue
*** using the information listed below, you can ask for help at
***
***     https://answers.launchpad.net/dolfin
***
*** Remember to include the error message listed below and, if possible,
*** include a *minimal* running example to reproduce the error.
***
*** -------------------------------------------------------------------------
*** Error:  Unable to resize uBLAS vector.
*** Reason: Distributed vectors not supported by uBLAS backend.
*** Where:  This error was encountered inside uBLASVector.cpp.
*** -------------------------------------------------------------------------


======================================================================
ERROR: Test assembly over subdomains with markers stored as part of mesh
----------------------------------------------------------------------
Traceback (most recent call last):
  File "SystemAssembler.py", line 147, in test_subdomain_assembly_meshdomains
    A0, b0 = assemble_system(a0, L0)
  File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/fem/assembling.py",
line 283, in assemble_system
    finalize_tensor)
  File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/cpp.py",
line 18382, in assemble_system
    return _cpp.assemble_system(*args)
RuntimeError:

*** -------------------------------------------------------------------------
*** DOLFIN encountered an error. If you are not able to resolve this issue
*** using the information listed below, you can ask for help at
***
***     https://answers.launchpad.net/dolfin
***
*** Remember to include the error message listed below and, if possible,
*** include a *minimal* running example to reproduce the error.
***
*** -------------------------------------------------------------------------
*** Error:  Unable to resize uBLAS vector.
*** Reason: Distributed vectors not supported by uBLAS backend.
*** Where:  This error was encountered inside uBLASVector.cpp.
*** -------------------------------------------------------------------------


----------------------------------------------------------------------
Ran 3 tests in 0.198s

FAILED (errors=2)

======================================================================
ERROR: test_cell_assembly (__main__.TestSystemAssembler)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "SystemAssembler.py", line 51, in test_cell_assembly
    A, b = assemble_system(a, L)
  File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/fem/assembling.py",
line 283, in assemble_system
    finalize_tensor)
  File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/cpp.py",
line 18382, in assemble_system
    return _cpp.assemble_system(*args)
RuntimeError:

*** -------------------------------------------------------------------------
*** DOLFIN encountered an error. If you are not able to resolve this issue
*** using the information listed below, you can ask for help at
***
***     https://answers.launchpad.net/dolfin
***
*** Remember to include the error message listed below and, if possible,
*** include a *minimal* running example to reproduce the error.
***
*** -------------------------------------------------------------------------
*** Error:  Unable to resize uBLAS vector.
*** Reason: Distributed vectors not supported by uBLAS backend.
*** Where:  This error was encountered inside uBLASVector.cpp.
*** -------------------------------------------------------------------------


======================================================================
ERROR: Test assembly over subdomains with markers stored as part of mesh
----------------------------------------------------------------------
Traceback (most recent call last):
  File "SystemAssembler.py", line 147, in test_subdomain_assembly_meshdomains
    A0, b0 = assemble_system(a0, L0)
  File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/fem/assembling.py",
line 283, in assemble_system
    finalize_tensor)
  File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/cpp.py",
line 18382, in assemble_system
    return _cpp.assemble_system(*args)
RuntimeError:

*** -------------------------------------------------------------------------
*** DOLFIN encountered an error. If you are not able to resolve this issue
*** using the information listed below, you can ask for help at
***
***     https://answers.launchpad.net/dolfin
***
*** Remember to include the error message listed below and, if possible,
*** include a *minimal* running example to reproduce the error.
***
*** -------------------------------------------------------------------------
*** Error:  Unable to resize uBLAS vector.
*** Reason: Distributed vectors not supported by uBLAS backend.
*** Where:  This error was encountered inside uBLASVector.cpp.
*** -------------------------------------------------------------------------


----------------------------------------------------------------------
Ran 3 tests in 0.192s

FAILED (errors=2)
^Cmpirun: killing job...

--------------------------------------------------------------------------
mpirun was unable to cleanly terminate the daemons on the nodes shown
below. Additional manual cleanup may be required - please refer to
the "orte-clean" tool for assistance.
--------------------------------------------------------------------------