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Message #08776
Re: Fwd: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
I can see that table programrule has a column "condition" which appears to
be a reserved <https://dev.mysql.com/doc/refman/5.5/en/keywords.html> word
in mysql.
Will look into it.
Lars
On Tue, Dec 8, 2015 at 7:05 AM, Neeraj Gupta <neeraj.hisp@xxxxxxxxx> wrote:
> Yes, ran all sql scripts.
>
> On Tue, Dec 8, 2015 at 11:34 AM, Knut Staring <knutst@xxxxxxxxx> wrote:
>
>> But I assume you ran all the Sql update scripts?
>> On 8 Dec 2015 07:02, "Knut Staring" <knutst@xxxxxxxxx> wrote:
>>
>>> ---------- Forwarded message ----------
>>> From: "Neeraj Gupta" <neeraj.hisp@xxxxxxxxx>
>>> Date: 8 Dec 2015 06:54
>>> Subject: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
>>> To: "Knut Staring" <knutst@xxxxxxxxx>
>>> Cc:
>>>
>>> Thanks for replying Knut.
>>>
>>> We upgraded directly from 2.16 to 2.21. But the errors seems more
>>> database related
>>>
>>> For example if we see drop _orgunitstructure query, it should be dropped
>>> irrespective of versions.
>>>
>>> On Mon, Dec 7, 2015 at 6:24 PM, Knut Staring <knutst@xxxxxxxxx> wrote:
>>>
>>>> You upgraded directly? Or step by step (2.17, 2.18...)
>>>>
>>>> On Mon, Dec 7, 2015 at 1:52 PM, Neeraj Gupta <neeraj.hisp@xxxxxxxxx>
>>>> wrote:
>>>>
>>>>> Dear All,
>>>>>
>>>>> We recently upgraded DHIS 2.16 to 2.21 where database is Mysql some of
>>>>> the errors are listed below, can someone please guide us?*(We are
>>>>> using aggregated data not tracker)*
>>>>>
>>>>> Error1:
>>>>> In mysql *programrule *table is not created automatically. While
>>>>> starting getting the below error:
>>>>>
>>>>>
>>>>> * ERROR 2015-12-07 17:36:56,864 Problem updating: programrule, id
>>>>> column: programruleid (IdentityPopulator.java [localho
>>>>> st-startStop-1])
>>>>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback;
>>>>> bad SQL grammar [SELECT * from programrule WHERE uid
>>>>> IS NULL]; nested exception is
>>>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table
>>>>> 'dhis.programrule'
>>>>> doesn't exist
>>>>> at
>>>>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
>>>>> lator.java:231)
>>>>> at
>>>>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
>>>>> nTranslator.java:73)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:471)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate.queryForRowSet(JdbcTemplate.java:526)
>>>>> at
>>>>> org.hisp.dhis.common.IdentityPopulator.execute(IdentityPopulator.java:86)
>>>>> at
>>>>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:117)
>>>>> at
>>>>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:86)
>>>>> at
>>>>> org.hisp.dhis.system.startup.StartupListener.contextInitialized(StartupListener.java:71)
>>>>> at
>>>>> org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4729)
>>>>> at
>>>>> org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5167)
>>>>> at
>>>>> org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
>>>>> at
>>>>> org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
>>>>> at
>>>>> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
>>>>> at
>>>>> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
>>>>> at
>>>>> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
>>>>> at
>>>>> org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1768)
>>>>> at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
>>>>> Source)
>>>>> at java.util.concurrent.FutureTask.run(Unknown Source)
>>>>> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>>>>> Source)
>>>>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>>>>> Source)
>>>>> at java.lang.Thread.run(Unknown Source)
>>>>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException:
>>>>> Table 'dhis.programrule' doesn't exist
>>>>> at
>>>>> sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
>>>>> at
>>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
>>>>> at java.lang.reflect.Constructor.newInstance(Unknown Source)
>>>>> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
>>>>> at com.mysql.jdbc.Util.getInstance(Util.java:360)
>>>>> at
>>>>> com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
>>>>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
>>>>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
>>>>> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
>>>>> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
>>>>> at
>>>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
>>>>> at
>>>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
>>>>> at
>>>>> com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1446)
>>>>> at
>>>>> com.mchange.v2.c3p0.impl.NewProxyStatement.executeQuery(NewProxyStatement.java:35)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate$1QueryStatementCallback.doInStatement(JdbcTemplate.java:455)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
>>>>> ... 19 more
>>>>> * INFO 2015-12-07 17:36:57,144 Executing startup routine [6 of 13,
>>>>> runlevel 5]: TableCreator (DefaultStartupRoutineExec
>>>>> utor.java [localhost-startStop-1])
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>>
>>>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>>
>>>>> Error2: While generating resource tables got the below error, think
>>>>> the query should be *DROP TABLE IF EXISTS _orgunitstructure; Same
>>>>> applies for all resource tables.*
>>>>>
>>>>> * INFO 2015-12-07 17:41:06,417 [Level: INFO, category:
>>>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messag
>>>>> e: Generating resource tables] (InMemoryNotifier.java
>>>>> [taskScheduler-1])
>>>>> * INFO 2015-12-07 17:41:06,465 Create table SQL: create table
>>>>> _orgunitstructure_temp (organisationunitid integer not nu
>>>>> ll primary key, organisationunituid character(11), level integer,
>>>>> `idlevel1` integer, `uidlevel1` character(11), `idleve
>>>>> l2` integer, `uidlevel2` character(11), `idlevel3` integer,
>>>>> `uidlevel3` character(11)); (JdbcResourceTableStore.java [ta
>>>>> skScheduler-1])
>>>>> * INFO 2015-12-07 17:41:06,495 Populate table content rows: 203
>>>>> (JdbcResourceTableStore.java [taskScheduler-1])
>>>>> * INFO 2015-12-07 17:41:06,546 Create index SQL: create unique index
>>>>> in_orgunitstructure_organisationunituid_VWU2G on _
>>>>> orgunitstructure_temp(organisationunituid)
>>>>> (JdbcResourceTableStore.java [taskScheduler-1])
>>>>> * INFO 2015-12-07 17:41:06,582 [Level: ERROR, category:
>>>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messa
>>>>> ge: Process failed: StatementCallback; bad SQL grammar [drop table
>>>>> _orgunitstructure;]; nested exception is com.mysql.jd
>>>>> bc.exceptions.jdbc4.MySQLSyntaxErrorException: Unknown table
>>>>> 'dhis._orgunitstructure'] (InMemoryNotifier.java [tas
>>>>> kScheduler-1])
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>>
>>>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>>
>>>>> Error3: Tried to copy resource table structures from old db and tried
>>>>> generate resource table option, this time got the below error:
>>>>>
>>>>> * INFO 2015-12-07 18:05:19,296 [Level: ERROR, category:
>>>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 18:05:19 IST 2015, messa
>>>>> ge: Process failed: StatementCallback; bad SQL grammar [create unique
>>>>> index in_dataelementstructure_dataelementuid_M86c6
>>>>> on _dataelementstructure_temp(dataelementuid);create index
>>>>> in_dataelementstructure_datasetid_fVMFF on _dataelementstruc
>>>>> ture_temp(datasetid);create index
>>>>> in_dataelementstructure_datasetuid_nsdEu on
>>>>> _dataelementstructure_temp(datasetuid);cre
>>>>> ate index in_dataelementstructure_periodtypeid_EkjZg on
>>>>> _dataelementstructure_temp(periodtypeid);]; nested exception is
>>>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an
>>>>> error in your SQL syntax; check the manual that c
>>>>> orresponds to your MySQL server version for the right syntax to use
>>>>> near 'create index in_dataelementstructure_datasetid
>>>>> _fVMFF on _dataelementstructure_te' at line 1] (InMemoryNotifier.java
>>>>> [taskScheduler-5])
>>>>> * ERROR 2015-12-07 18:05:19,319 Unexpected error occurred in
>>>>> scheduled task. (TaskUtils.java [taskScheduler-5])
>>>>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback;
>>>>> bad SQL grammar [create unique index in_dataelements
>>>>> tructure_dataelementuid_M86c6 on
>>>>> _dataelementstructure_temp(dataelementuid);create index
>>>>> in_dataelementstructure_dataset
>>>>> id_fVMFF on _dataelementstructure_temp(datasetid);create index
>>>>> in_dataelementstructure_datasetuid_nsdEu on _dataelements
>>>>> tructure_temp(datasetuid);create index
>>>>> in_dataelementstructure_periodtypeid_EkjZg on
>>>>> _dataelementstructure_temp(periodty
>>>>> peid);]; nested exception is
>>>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an
>>>>> error in your SQL sy
>>>>> ntax; check the manual that corresponds to your MySQL server version
>>>>> for the right syntax to use near 'create index in_d
>>>>> ataelementstructure_datasetid_fVMFF on _dataelementstructure_te' at
>>>>> line 1
>>>>> at
>>>>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
>>>>> lator.java:231)
>>>>> at
>>>>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
>>>>> nTranslator.java:73)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:440)
>>>>> at
>>>>> org.hisp.dhis.resourcetable.jdbc.JdbcResourceTableStore.generateResourceTable(JdbcResourceTableStore.java:118
>>>>> )
>>>>> at
>>>>> org.hisp.dhis.resourcetable.DefaultResourceTableService.generateDataElementTable(DefaultResourceTableService.
>>>>> java:198)
>>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>> at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>>>>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
>>>>> Source)
>>>>> at java.lang.reflect.Method.invoke(Unknown Source)
>>>>> at
>>>>> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
>>>>> at
>>>>> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:
>>>>> 190)
>>>>> at
>>>>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
>>>>> at
>>>>> org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterce
>>>>> ptor.java:99)
>>>>> at
>>>>> org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspec
>>>>> tSupport.java:281)
>>>>> at
>>>>> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
>>>>> at
>>>>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
>>>>> at
>>>>> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
>>>>> at com.sun.proxy.$Proxy143.generateDataElementTable(Unknown
>>>>> Source)
>>>>> at
>>>>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.generateAll(ResourceTableTask.java:121)
>>>>> at
>>>>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.run(ResourceTableTask.java:84)
>>>>> at
>>>>> org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.ja
>>>>> va:54)
>>>>> at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
>>>>> Source)
>>>>> at java.util.concurrent.FutureTask.run(Unknown Source)
>>>>> at
>>>>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(Unknown
>>>>> Source)
>>>>> at
>>>>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown
>>>>> Source)
>>>>> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>>>>> Source)
>>>>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>>>>> Source)
>>>>> at java.lang.Thread.run(Unknown Source)
>>>>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException:
>>>>> You have an error in your SQL syntax; check the ma
>>>>> nual that corresponds to your MySQL server version for the right
>>>>> syntax to use near 'create index in_dataelementstructur
>>>>> e_datasetid_fVMFF on _dataelementstructure_te' at line 1
>>>>> at
>>>>> sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
>>>>> at
>>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
>>>>> at java.lang.reflect.Constructor.newInstance(Unknown Source)
>>>>> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
>>>>> at com.mysql.jdbc.Util.getInstance(Util.java:360)
>>>>> at
>>>>> com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
>>>>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
>>>>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
>>>>> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
>>>>> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
>>>>> at
>>>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
>>>>> at
>>>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
>>>>> at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:848)
>>>>> at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:742)
>>>>> at
>>>>> com.mchange.v2.c3p0.impl.NewProxyStatement.execute(NewProxyStatement.java:1006)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate$1ExecuteStatementCallback.doInStatement(JdbcTemplate.java:432)
>>>>> at
>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
>>>>> ... 26 more
>>>>>
>>>>> --
>>>>> Thanks,
>>>>> Neeraj Gupta
>>>>>
>>>>> _______________________________________________
>>>>> Mailing list: https://launchpad.net/~dhis2-devs
>>>>> Post to : dhis2-devs@xxxxxxxxxxxxxxxxxxx
>>>>> Unsubscribe : https://launchpad.net/~dhis2-devs
>>>>> More help : https://help.launchpad.net/ListHelp
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Knut Staring
>>>> Dept. of Informatics, University of Oslo
>>>> Norway: +4791880522
>>>> Skype: knutstar
>>>> http://dhis2.org
>>>>
>>>
>>>
>>>
>>> --
>>> Thanks,
>>> Neeraj Gupta
>>>
>>
>> _______________________________________________
>> Mailing list: https://launchpad.net/~dhis2-users
>> Post to : dhis2-users@xxxxxxxxxxxxxxxxxxx
>> Unsubscribe : https://launchpad.net/~dhis2-users
>> More help : https://help.launchpad.net/ListHelp
>>
>>
>
>
> --
> Thanks,
> Neeraj Gupta
>
> _______________________________________________
> Mailing list: https://launchpad.net/~dhis2-users
> Post to : dhis2-users@xxxxxxxxxxxxxxxxxxx
> Unsubscribe : https://launchpad.net/~dhis2-users
> More help : https://help.launchpad.net/ListHelp
>
>
--
Lars Helge Øverland
Lead developer, DHIS 2
University of Oslo
Skype: larshelgeoverland
http://www.dhis2.org <https://www.dhis2.org>
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