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Message #08777
Re: Fwd: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
Thanks Lars.
Shall I report the bug nn launchpad for this?
On Tue, Dec 8, 2015 at 1:55 PM, Lars Helge Øverland <larshelge@xxxxxxxxx>
wrote:
> I can see that table programrule has a column "condition" which appears to
> be a reserved <https://dev.mysql.com/doc/refman/5.5/en/keywords.html>
> word in mysql.
>
> Will look into it.
>
> Lars
>
> On Tue, Dec 8, 2015 at 7:05 AM, Neeraj Gupta <neeraj.hisp@xxxxxxxxx>
> wrote:
>
>> Yes, ran all sql scripts.
>>
>> On Tue, Dec 8, 2015 at 11:34 AM, Knut Staring <knutst@xxxxxxxxx> wrote:
>>
>>> But I assume you ran all the Sql update scripts?
>>> On 8 Dec 2015 07:02, "Knut Staring" <knutst@xxxxxxxxx> wrote:
>>>
>>>> ---------- Forwarded message ----------
>>>> From: "Neeraj Gupta" <neeraj.hisp@xxxxxxxxx>
>>>> Date: 8 Dec 2015 06:54
>>>> Subject: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
>>>> To: "Knut Staring" <knutst@xxxxxxxxx>
>>>> Cc:
>>>>
>>>> Thanks for replying Knut.
>>>>
>>>> We upgraded directly from 2.16 to 2.21. But the errors seems more
>>>> database related
>>>>
>>>> For example if we see drop _orgunitstructure query, it should be
>>>> dropped irrespective of versions.
>>>>
>>>> On Mon, Dec 7, 2015 at 6:24 PM, Knut Staring <knutst@xxxxxxxxx> wrote:
>>>>
>>>>> You upgraded directly? Or step by step (2.17, 2.18...)
>>>>>
>>>>> On Mon, Dec 7, 2015 at 1:52 PM, Neeraj Gupta <neeraj.hisp@xxxxxxxxx>
>>>>> wrote:
>>>>>
>>>>>> Dear All,
>>>>>>
>>>>>> We recently upgraded DHIS 2.16 to 2.21 where database is Mysql some
>>>>>> of the errors are listed below, can someone please guide us?*(We are
>>>>>> using aggregated data not tracker)*
>>>>>>
>>>>>> Error1:
>>>>>> In mysql *programrule *table is not created automatically. While
>>>>>> starting getting the below error:
>>>>>>
>>>>>>
>>>>>> * ERROR 2015-12-07 17:36:56,864 Problem updating: programrule, id
>>>>>> column: programruleid (IdentityPopulator.java [localho
>>>>>> st-startStop-1])
>>>>>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback;
>>>>>> bad SQL grammar [SELECT * from programrule WHERE uid
>>>>>> IS NULL]; nested exception is
>>>>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table
>>>>>> 'dhis.programrule'
>>>>>> doesn't exist
>>>>>> at
>>>>>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
>>>>>> lator.java:231)
>>>>>> at
>>>>>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
>>>>>> nTranslator.java:73)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:471)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate.queryForRowSet(JdbcTemplate.java:526)
>>>>>> at
>>>>>> org.hisp.dhis.common.IdentityPopulator.execute(IdentityPopulator.java:86)
>>>>>> at
>>>>>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:117)
>>>>>> at
>>>>>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:86)
>>>>>> at
>>>>>> org.hisp.dhis.system.startup.StartupListener.contextInitialized(StartupListener.java:71)
>>>>>> at
>>>>>> org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4729)
>>>>>> at
>>>>>> org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5167)
>>>>>> at
>>>>>> org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
>>>>>> at
>>>>>> org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
>>>>>> at
>>>>>> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
>>>>>> at
>>>>>> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
>>>>>> at
>>>>>> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
>>>>>> at
>>>>>> org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1768)
>>>>>> at
>>>>>> java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
>>>>>> at java.util.concurrent.FutureTask.run(Unknown Source)
>>>>>> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>>>>>> Source)
>>>>>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>>>>>> Source)
>>>>>> at java.lang.Thread.run(Unknown Source)
>>>>>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException:
>>>>>> Table 'dhis.programrule' doesn't exist
>>>>>> at
>>>>>> sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
>>>>>> at
>>>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
>>>>>> at java.lang.reflect.Constructor.newInstance(Unknown Source)
>>>>>> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
>>>>>> at com.mysql.jdbc.Util.getInstance(Util.java:360)
>>>>>> at
>>>>>> com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
>>>>>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
>>>>>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
>>>>>> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
>>>>>> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
>>>>>> at
>>>>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
>>>>>> at
>>>>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
>>>>>> at
>>>>>> com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1446)
>>>>>> at
>>>>>> com.mchange.v2.c3p0.impl.NewProxyStatement.executeQuery(NewProxyStatement.java:35)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate$1QueryStatementCallback.doInStatement(JdbcTemplate.java:455)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
>>>>>> ... 19 more
>>>>>> * INFO 2015-12-07 17:36:57,144 Executing startup routine [6 of 13,
>>>>>> runlevel 5]: TableCreator (DefaultStartupRoutineExec
>>>>>> utor.java [localhost-startStop-1])
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>>>
>>>>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>>>
>>>>>> Error2: While generating resource tables got the below error, think
>>>>>> the query should be *DROP TABLE IF EXISTS _orgunitstructure; Same
>>>>>> applies for all resource tables.*
>>>>>>
>>>>>> * INFO 2015-12-07 17:41:06,417 [Level: INFO, category:
>>>>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messag
>>>>>> e: Generating resource tables] (InMemoryNotifier.java
>>>>>> [taskScheduler-1])
>>>>>> * INFO 2015-12-07 17:41:06,465 Create table SQL: create table
>>>>>> _orgunitstructure_temp (organisationunitid integer not nu
>>>>>> ll primary key, organisationunituid character(11), level integer,
>>>>>> `idlevel1` integer, `uidlevel1` character(11), `idleve
>>>>>> l2` integer, `uidlevel2` character(11), `idlevel3` integer,
>>>>>> `uidlevel3` character(11)); (JdbcResourceTableStore.java [ta
>>>>>> skScheduler-1])
>>>>>> * INFO 2015-12-07 17:41:06,495 Populate table content rows: 203
>>>>>> (JdbcResourceTableStore.java [taskScheduler-1])
>>>>>> * INFO 2015-12-07 17:41:06,546 Create index SQL: create unique
>>>>>> index in_orgunitstructure_organisationunituid_VWU2G on _
>>>>>> orgunitstructure_temp(organisationunituid)
>>>>>> (JdbcResourceTableStore.java [taskScheduler-1])
>>>>>> * INFO 2015-12-07 17:41:06,582 [Level: ERROR, category:
>>>>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messa
>>>>>> ge: Process failed: StatementCallback; bad SQL grammar [drop table
>>>>>> _orgunitstructure;]; nested exception is com.mysql.jd
>>>>>> bc.exceptions.jdbc4.MySQLSyntaxErrorException: Unknown table
>>>>>> 'dhis._orgunitstructure'] (InMemoryNotifier.java [tas
>>>>>> kScheduler-1])
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>>>
>>>>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>>>
>>>>>> Error3: Tried to copy resource table structures from old db and tried
>>>>>> generate resource table option, this time got the below error:
>>>>>>
>>>>>> * INFO 2015-12-07 18:05:19,296 [Level: ERROR, category:
>>>>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 18:05:19 IST 2015, messa
>>>>>> ge: Process failed: StatementCallback; bad SQL grammar [create unique
>>>>>> index in_dataelementstructure_dataelementuid_M86c6
>>>>>> on _dataelementstructure_temp(dataelementuid);create index
>>>>>> in_dataelementstructure_datasetid_fVMFF on _dataelementstruc
>>>>>> ture_temp(datasetid);create index
>>>>>> in_dataelementstructure_datasetuid_nsdEu on
>>>>>> _dataelementstructure_temp(datasetuid);cre
>>>>>> ate index in_dataelementstructure_periodtypeid_EkjZg on
>>>>>> _dataelementstructure_temp(periodtypeid);]; nested exception is
>>>>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have
>>>>>> an error in your SQL syntax; check the manual that c
>>>>>> orresponds to your MySQL server version for the right syntax to use
>>>>>> near 'create index in_dataelementstructure_datasetid
>>>>>> _fVMFF on _dataelementstructure_te' at line 1] (InMemoryNotifier.java
>>>>>> [taskScheduler-5])
>>>>>> * ERROR 2015-12-07 18:05:19,319 Unexpected error occurred in
>>>>>> scheduled task. (TaskUtils.java [taskScheduler-5])
>>>>>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback;
>>>>>> bad SQL grammar [create unique index in_dataelements
>>>>>> tructure_dataelementuid_M86c6 on
>>>>>> _dataelementstructure_temp(dataelementuid);create index
>>>>>> in_dataelementstructure_dataset
>>>>>> id_fVMFF on _dataelementstructure_temp(datasetid);create index
>>>>>> in_dataelementstructure_datasetuid_nsdEu on _dataelements
>>>>>> tructure_temp(datasetuid);create index
>>>>>> in_dataelementstructure_periodtypeid_EkjZg on
>>>>>> _dataelementstructure_temp(periodty
>>>>>> peid);]; nested exception is
>>>>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an
>>>>>> error in your SQL sy
>>>>>> ntax; check the manual that corresponds to your MySQL server version
>>>>>> for the right syntax to use near 'create index in_d
>>>>>> ataelementstructure_datasetid_fVMFF on _dataelementstructure_te' at
>>>>>> line 1
>>>>>> at
>>>>>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
>>>>>> lator.java:231)
>>>>>> at
>>>>>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
>>>>>> nTranslator.java:73)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:440)
>>>>>> at
>>>>>> org.hisp.dhis.resourcetable.jdbc.JdbcResourceTableStore.generateResourceTable(JdbcResourceTableStore.java:118
>>>>>> )
>>>>>> at
>>>>>> org.hisp.dhis.resourcetable.DefaultResourceTableService.generateDataElementTable(DefaultResourceTableService.
>>>>>> java:198)
>>>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>>> at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>>>>>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
>>>>>> Source)
>>>>>> at java.lang.reflect.Method.invoke(Unknown Source)
>>>>>> at
>>>>>> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
>>>>>> at
>>>>>> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:
>>>>>> 190)
>>>>>> at
>>>>>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
>>>>>> at
>>>>>> org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterce
>>>>>> ptor.java:99)
>>>>>> at
>>>>>> org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspec
>>>>>> tSupport.java:281)
>>>>>> at
>>>>>> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
>>>>>> at
>>>>>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
>>>>>> at
>>>>>> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
>>>>>> at com.sun.proxy.$Proxy143.generateDataElementTable(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.generateAll(ResourceTableTask.java:121)
>>>>>> at
>>>>>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.run(ResourceTableTask.java:84)
>>>>>> at
>>>>>> org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.ja
>>>>>> va:54)
>>>>>> at
>>>>>> java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
>>>>>> at java.util.concurrent.FutureTask.run(Unknown Source)
>>>>>> at
>>>>>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown
>>>>>> Source)
>>>>>> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>>>>>> Source)
>>>>>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>>>>>> Source)
>>>>>> at java.lang.Thread.run(Unknown Source)
>>>>>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException:
>>>>>> You have an error in your SQL syntax; check the ma
>>>>>> nual that corresponds to your MySQL server version for the right
>>>>>> syntax to use near 'create index in_dataelementstructur
>>>>>> e_datasetid_fVMFF on _dataelementstructure_te' at line 1
>>>>>> at
>>>>>> sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
>>>>>> at
>>>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
>>>>>> at java.lang.reflect.Constructor.newInstance(Unknown Source)
>>>>>> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
>>>>>> at com.mysql.jdbc.Util.getInstance(Util.java:360)
>>>>>> at
>>>>>> com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
>>>>>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
>>>>>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
>>>>>> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
>>>>>> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
>>>>>> at
>>>>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
>>>>>> at
>>>>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
>>>>>> at
>>>>>> com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:848)
>>>>>> at
>>>>>> com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:742)
>>>>>> at
>>>>>> com.mchange.v2.c3p0.impl.NewProxyStatement.execute(NewProxyStatement.java:1006)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate$1ExecuteStatementCallback.doInStatement(JdbcTemplate.java:432)
>>>>>> at
>>>>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
>>>>>> ... 26 more
>>>>>>
>>>>>> --
>>>>>> Thanks,
>>>>>> Neeraj Gupta
>>>>>>
>>>>>> _______________________________________________
>>>>>> Mailing list: https://launchpad.net/~dhis2-devs
>>>>>> Post to : dhis2-devs@xxxxxxxxxxxxxxxxxxx
>>>>>> Unsubscribe : https://launchpad.net/~dhis2-devs
>>>>>> More help : https://help.launchpad.net/ListHelp
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Knut Staring
>>>>> Dept. of Informatics, University of Oslo
>>>>> Norway: +4791880522
>>>>> Skype: knutstar
>>>>> http://dhis2.org
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Thanks,
>>>> Neeraj Gupta
>>>>
>>>
>>> _______________________________________________
>>> Mailing list: https://launchpad.net/~dhis2-users
>>> Post to : dhis2-users@xxxxxxxxxxxxxxxxxxx
>>> Unsubscribe : https://launchpad.net/~dhis2-users
>>> More help : https://help.launchpad.net/ListHelp
>>>
>>>
>>
>>
>> --
>> Thanks,
>> Neeraj Gupta
>>
>> _______________________________________________
>> Mailing list: https://launchpad.net/~dhis2-users
>> Post to : dhis2-users@xxxxxxxxxxxxxxxxxxx
>> Unsubscribe : https://launchpad.net/~dhis2-users
>> More help : https://help.launchpad.net/ListHelp
>>
>>
>
>
> --
> Lars Helge Øverland
> Lead developer, DHIS 2
> University of Oslo
> Skype: larshelgeoverland
> http://www.dhis2.org <https://www.dhis2.org>
>
>
--
Thanks,
Neeraj Gupta
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