dolfin team mailing list archive

[Anders Logg <logg@xxxxxxxxx>]

On Tue, Mar 11, 2008 at 03:46:16PM +0100, johannr@xxxxxxxxx wrote:
> On Tue, Mar 11, 2008 Anders Logg wrote:
> > On Tue, Mar 11, 2008 at 03:32:19PM +0100, Ilmar Wilbers wrote:
> >> The atlas3-sse2-dev package does things differently from the normal
> >> expected atlas. In umfpack.py we expect the atlas libraries to reside in
> >> /usr/lib/atlas. This is the case with altas3-base-dev, but not with the
> >> package you tried.
> >>
> >> Setting ATLAS_DIR does the trick. Alternatively, using atlas3-base-dev,
> >> the library files are located at the expected location.
> >
> > ok, I fixed this by setting the symlink manually.
> >
> > I now have a similar problem with PETSc:
> >
> > `pkg-config --variable=compiler dolfin` -o demo main.o `pkg-config
> > --cflags dolfin` `pkg-config --libs dolfin`
> > /usr/bin/ld: warning: libpetscsnes.so, needed by
> > /home/logg/local/lib/libdolfin.so, not found (try using -rpath or
> > -rpath-link)
> > /usr/bin/ld: warning: libpetscmat.so, needed by
> > /home/logg/local/lib/libdolfin.so, not found (try using -rpath or
> > -rpath-link)
> > /usr/bin/ld: warning: libpetscvec.so, needed by
> > /home/logg/local/lib/libdolfin.so, not found (try using -rpath or
> > -rpath-link)
> > /usr/bin/ld: warning: libpetscts.so, needed by
> > /home/logg/local/lib/libdolfin.so, not found (try using -rpath or
> > -rpath-link)
> > /usr/bin/ld: warning: libpetsc.so, needed by
> > /home/logg/local/lib/libdolfin.so, not found (try using -rpath or
> > -rpath-link)
> > /usr/bin/ld: warning: libpetscdm.so, needed by
> > /home/logg/local/lib/libdolfin.so, not found (try using -rpath or
> > -rpath-link)
> > /usr/bin/ld: warning: libpetscksp.so, needed by
> > /home/logg/local/lib/libdolfin.so, not found (try using -rpath or
> > -rpath-link)
> > /home/logg/local/lib/libdolfin.so: undefined reference to
> > `VecGetArray_Private(_p_Vec*, double**)'
> > /home/logg/local/lib/libdolfin.so: undefined reference to
> > `MatView(_p_Mat*, _p_PetscViewer*)'
> > /home/logg/local/lib/libdolfin.so: undefined reference to
> > `KSPView(_p_KSP*, _p_PetscViewer*)'
> > ...
> >
> >
> > pkg-config --libs dolfin returns
> >
> >   -L/home/logg/local/lib -ldolfin -lxml2
> >
> > Did I miss something?
> 
> What does your dolfin.pc look like? Is it located somewhere in your
> PKG_CONFIG_PATH variable? Or is it perhaps an old dolfin.pc file that is
> used?
> 
> Johannes

Yes, that was the problem!

But fixing that, I ran into problems with undefined symbols ATL_zGetNB
etc. Removing atlas3-sse2-dev and installing atlas3-base-dev fixed
this.

-- 
Anders