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Message #03372
Re: undefined symbol: Py_InitModule4
> First thank you for your reply of my last question!
> I still use yade-0.12rc1 because I have already done some work on
> version 0.12rc1, so I want to keep it. After reinstall dependecies, it
> showed the following content. Is it because of the version of Python?
>
> thank you very much!
>
> jchen@jturnmir-desktop:~/YADE/bin$ ./yade-0.12rc1
> ./yade-0.12rc1: symbol lookup error: /usr/lib/libboost_python-
> gcc42-mt-1_34_1.so.1.34.1: undefined symbol: Py_InitModule4
Hi Jingsong,
I managed to compile 0.12rc1 on Uubtu 10.04 (with the patch attached,
and with
exclude=exclude=extra,fem,lattice,mass-spring,realtime-rigidbody) and I
don't see the error you have. I can launch yade normally. Therefore I
think the problem is really in the hardcoded python version.
I get crash when trying to run the generator dialogue, so I cannot help
you more here unfortunately.
Cheers, Vaclav
Index: pkg/dem/SConscript
===================================================================
--- pkg/dem/SConscript (revision 1453)
+++ pkg/dem/SConscript (working copy)
@@ -388,9 +388,6 @@
'ElasticContactLaw',
'MacroMicroElasticRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'CundallNonViscousDamping',
@@ -425,9 +422,6 @@
'ForceRecorder',
'MacroMicroElasticRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'yade-base',
'InteractingSphere',
'InteractingBox',
@@ -464,9 +458,6 @@
'PositionSnapshot',
'ForceSnapshot',
'ForceRecorder',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'CundallNonViscousDamping',
@@ -500,9 +491,6 @@
'ElasticCohesiveLaw',
'MacroMicroElasticRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'CundallNonViscousDamping',
@@ -535,9 +523,6 @@
'MacroMicroElasticRelationships',
'ElasticCriterionTimeStepper',
'PositionOrientationRecorder',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'CundallNonViscousDamping',
@@ -569,9 +554,6 @@
'MacroMicroElasticRelationships',
'ElasticCriterionTimeStepper',
'PositionOrientationRecorder',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'CundallNonViscousDamping',
@@ -602,9 +584,6 @@
LIBS=env['LIBS']+['MyTetrahedronLaw',
'MacroMicroElasticRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'InteractingMyTetrahedron',
'InteractingSphere',
'InteractingBox',
@@ -641,10 +620,7 @@
'ForceRecorder',
'SimpleElasticRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
'InteractionHashMap',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'NewtonsDampedLaw',
@@ -686,10 +662,7 @@
'ForceRecorder',
'CohesiveFrictionalRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
'InteractionHashMap',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'InteractingSphere2InteractingSphere4DistantSpheresContactGeometry',
@@ -734,10 +707,7 @@
'ForceRecorder',
'CohesiveFrictionalRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
'InteractionHashMap',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'InteractingSphere2InteractingSphere4DistantSpheresContactGeometry',
@@ -780,9 +750,6 @@
'ElasticCohesiveLaw',
'MacroMicroElasticRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'CundallNonViscousDamping',
@@ -852,10 +819,7 @@
ContactStressRecorder
MacroMicroElasticRelationships
ElasticCriterionTimeStepper
- PhysicalActionVectorVector
- InteractionVecSet
InteractionHashMap
- BodyRedirectionVector
InteractingSphere
InteractingBox
CundallNonViscousDamping
@@ -975,10 +939,7 @@
'ForceRecorder',
'CohesiveFrictionalRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
'InteractionHashMap',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'CundallNonViscousDamping',
@@ -1070,12 +1031,10 @@
,'SimpleViscoelasticInteraction'
,'SimpleViscoelasticSpheresInteractionRecorder'
,'GravityEngines'
- ,'BodyRedirectionVector'
,'BoundingVolumeMetaEngine'
,'InteractingSphere'
,'InteractionGeometryMetaEngine'
,'InteractionPhysicsMetaEngine'
- ,'InteractionVecSet'
,'MetaInteractingGeometry'
,'MetaInteractingGeometry2AABB'
,'ParticleParameters'
@@ -1083,7 +1042,6 @@
,'PhysicalActionApplier'
,'PhysicalActionContainerInitializer'
,'PhysicalActionContainerReseter'
- ,'PhysicalActionVectorVector'
,'PhysicalParametersMetaEngine'
,'PersistentSAPCollider'
,'Sphere'
@@ -1093,7 +1051,6 @@
,['PreProcessor/STLImporterTest.cpp']
,LIBS=env['LIBS']+['AABB'
,'STLImporter'
- ,'BodyRedirectionVector'
,'BoundingVolumeMetaEngine'
,'CundallNonViscousDamping'
,'CundallNonViscousDamping'
@@ -1108,7 +1065,6 @@
,'InteractingVertex'
,'InteractionGeometryMetaEngine'
,'InteractionPhysicsMetaEngine'
- ,'InteractionVecSet'
,'MacroMicroElasticRelationships'
,'MetaInteractingGeometry'
,'MetaInteractingGeometry2AABB'
@@ -1116,7 +1072,6 @@
,'PhysicalActionApplier'
,'PhysicalActionContainerInitializer'
,'PhysicalActionContainerReseter'
- ,'PhysicalActionVectorVector'
,'PhysicalParametersMetaEngine'
,'SpatialQuickSortCollider'
,'Sphere'
Index: pkg/common/SConscript
===================================================================
--- pkg/common/SConscript (revision 1453)
+++ pkg/common/SConscript (working copy)
@@ -18,9 +18,6 @@
# env.SharedLibrary('InteractionVecSet',['Container/InteractionVecSet.cpp']),
# env.SharedLibrary('PhysicalActionVectorVector',['Container/PhysicalActionVectorVector.cpp']),
## still permit linking with that
- env.SharedLibrary('BodyRedirectionVector',[]),
- env.SharedLibrary('InteractionVecSet',[]),
- env.SharedLibrary('PhysicalActionVectorVector',[]),
env.SharedLibrary('AABB',['DataClass/BoundingVolume/AABB.cpp']),
env.SharedLibrary('BoundingSphere',['DataClass/BoundingVolume/BoundingSphere.cpp']),
Index: extra/SConscript
===================================================================
--- extra/SConscript (revision 1453)
+++ extra/SConscript (working copy)
@@ -58,9 +58,6 @@
'ElasticCohesiveLaw',
'MacroMicroElasticRelationships',
'ElasticCriterionTimeStepper',
- 'PhysicalActionVectorVector',
- 'InteractionVecSet',
- 'BodyRedirectionVector',
'InteractingSphere',
'InteractingBox',
'CundallNonViscousDamping',
Index: gui/SConscript
===================================================================
--- gui/SConscript (revision 1453)
+++ gui/SConscript (working copy)
@@ -44,9 +44,10 @@
env.File('PythonUI_rc.py','py'),
# env.SharedLibrary('PlotDataGetter',['py/PlotDataGetter.cpp']),
])
+ if 'qt3' not in env['exclude']:
+ env.Install('$PREFIX/lib/yade$SUFFIX/gui/yade',[env.SharedLibrary('qt',['qt3/QtGUI-python.cpp'],SHLIBPREFIX='',LIBS=env['LIBS']+['QtGUI'],CPPPATH=env['CPPPATH']+[env['buildDir']+'/gui/qt3'])])
# python modules are one level deeper so that you can say: from yade.wrapper import *
env.Install('$PREFIX/lib/yade$SUFFIX/gui/yade',[
- env.SharedLibrary('qt',['qt3/QtGUI-python.cpp'],SHLIBPREFIX='',LIBS=env['LIBS']+['QtGUI'],CPPPATH=env['CPPPATH']+[env['buildDir']+'/gui/qt3']), # CPPPATH is for files generated by moc which are indirectly included
env.SharedLibrary('wrapper',['py/yadeControl.cpp'],SHLIBPREFIX='',
LIBS=env['LIBS']+['yade-base','libboost_python','XMLFormatManager','yade-factory','yade-serialization','Shop',
'BoundingVolumeMetaEngine',
Index: core/yade.cpp
===================================================================
--- core/yade.cpp (revision 1453)
+++ core/yade.cpp (working copy)
@@ -55,7 +55,7 @@
if(sig==SIGABRT || sig==SIGSEGV){
signal(SIGSEGV,SIG_DFL); signal(SIGABRT,SIG_DFL); // prevent loops - default handlers
cerr<<"SIGSEGV/SIGABRT handler called; gdb batch file is `"<<Omega::instance().gdbCrashBatch<<"'"<<endl;
- system((string("gdb -x ")+Omega::instance().gdbCrashBatch).c_str());
+ ::system((string("gdb -x ")+Omega::instance().gdbCrashBatch).c_str());
unlink(Omega::instance().gdbCrashBatch.c_str()); // delete the crash batch file
raise(sig); // reemit signal after exiting gdb
}
@@ -165,6 +165,11 @@
#ifdef LOG4CXX
+ #ifdef LOG4CXX_DEBUG
+ log4cxx::LevelPtr debugLevel=log4cxx::Level::getDebug(), infoLevel=log4cxx::Level::getInfo(), warnLevel=log4cxx::Level::getWarn();
+ #else
+ log4cxx::LevelPtr debugLevel=log4cxx::Level::DEBUG, infoLevel=log4cxx::Level::INFO, warnLevel=log4cxx::Level::WARN;
+ #endif
// read logging configuration from file and watch it (creates a separate thread)
std::string logConf=configPath+"/logging.conf";
if(filesystem::exists(logConf)){
@@ -172,7 +177,7 @@
LOG_INFO("Loaded "<<logConf<<" (monitored)");
} else { // otherwise use simple console-directed logging
log4cxx::BasicConfigurator::configure();
- logger->setLevel(log4cxx::Level::WARN);
+ logger->setLevel(warnLevel);
LOG_INFO("Logger uses basic (console) configuration since `"<<logConf<<"' was not found. INFO and DEBUG messages will be ommited.");
LOG_INFO("Look at the file doc/logging.conf.sample in the source distribution as an example on how to customize logging.");
}
@@ -185,11 +190,11 @@
filesystem::path yadeConfigFile = filesystem::path(Omega::instance().yadeConfigPath + "/preferences.xml", filesystem::native);
#ifdef LOG4CXX
- if(verbose==1) logger->setLevel(log4cxx::Level::INFO);
- else if (verbose>=2) logger->setLevel(log4cxx::Level::DEBUG);
+ if(verbose==1) logger->setLevel(infoLevel);
+ else if (verbose>=2) logger->setLevel(debugLevel);
if(getenv("YADE_DEBUG")){
LOG_INFO("YADE_DEBUG environment variable is defined, setting logging level to DEBUG.");
- logger->setLevel(log4cxx::Level::DEBUG);
+ logger->setLevel(debugLevel);
}
#endif
Index: core/Omega.cpp
===================================================================
--- core/Omega.cpp (revision 1453)
+++ core/Omega.cpp (working copy)
@@ -187,6 +187,7 @@
thisLoaded=true;
}
else if(err.find(": undefined symbol: ")!=std::string::npos){
+ LOG_FATAL("Original error message: "<<err);
size_t pos=err.rfind(":");
assert(pos!=std::string::npos);
std::string sym(err,pos+2); //2 removes ": " from the beginning
Index: lib/SConscript
===================================================================
--- lib/SConscript (revision 1453)
+++ lib/SConscript (working copy)
@@ -44,6 +44,7 @@
# since the generated header is #include'd "...", it looks for it in the original dir
# no idea why this _does_ work with gui/qt3. Go figure.
CPPPATH=env['CPPPATH']+['${TARGET.dir}'],
+ LIBS=env['LIBS']+['GLU']
),
])
Index: lib/QGLViewer/VRender/FIGExporter.cpp
===================================================================
--- lib/QGLViewer/VRender/FIGExporter.cpp (revision 1453)
+++ lib/QGLViewer/VRender/FIGExporter.cpp (working copy)
@@ -47,6 +47,7 @@
#include "Exporter.h"
#include "math.h"
+#include <cstdio>
using namespace vrender ;
using namespace std ;
Index: lib/QGLViewer/VRender/Exporter.cpp
===================================================================
--- lib/QGLViewer/VRender/Exporter.cpp (revision 1453)
+++ lib/QGLViewer/VRender/Exporter.cpp (working copy)
@@ -48,6 +48,7 @@
#include <stdexcept>
#include "VRender.h"
#include "Exporter.h"
+#include<cstdio>
using namespace vrender ;
using namespace std ;
Index: lib/QGLViewer/VRender/BSPSortMethod.cpp
===================================================================
--- lib/QGLViewer/VRender/BSPSortMethod.cpp (revision 1453)
+++ lib/QGLViewer/VRender/BSPSortMethod.cpp (working copy)
@@ -49,6 +49,7 @@
#include "Primitive.h"
#include "SortMethod.h"
#include "math.h" // fabs
+#include <cstdio>
using namespace vrender ;
using namespace std;
Index: SConstruct
===================================================================
--- SConstruct (revision 1453)
+++ SConstruct (working copy)
@@ -292,6 +292,7 @@
def CheckLib_maybeMT(conf,lib,header,lang,func): return conf.CheckLibWithHeader(lib+'-mt',['limits.h',header],'c++',func,autoadd=1) or conf.CheckLibWithHeader(lib,['limits.h',header],lang,func,autoadd=1)
ok&=CheckLib_maybeMT(conf,'boost_date_time','boost/date_time/posix_time/posix_time.hpp','c++','boost::posix_time::time_duration::time_duration();')
ok&=CheckLib_maybeMT(conf,'boost_thread','boost/thread/thread.hpp','c++','boost::thread::thread();')
+ CheckLib_maybeMT(conf,'boost_system','boost/system/error_code.hpp','c++','boost::system::error_code();')
ok&=CheckLib_maybeMT(conf,'boost_filesystem','boost/filesystem/path.hpp','c++','boost::filesystem::path();')
ok&=CheckLib_maybeMT(conf,'boost_iostreams','boost/iostreams/device/file.hpp','c++','boost::iostreams::file_sink("");')
ok&=CheckLib_maybeMT(conf,'boost_regex','boost/regex.hpp','c++','boost::regex("");')
@@ -422,7 +423,7 @@
env.Append(RPATH=runtimeLibDirs)
# find already compiled but not yet installed libraries for linking
#env.Append(LIBPATH=[os.path.join('#',x) for x in libDirs] # -floop-optimize2 is a gcc-4.x flag, doesn't exist on previous version
-env.Append(LIBPATH=instLibDirs) # this is if we link to libs that are installed, which is the case now
+env.Append(LIBPATH=instLibDirs+runtimeLibDirs) # this is if we link to libs that are installed, which is the case now
### this workaround is only needed for scons<=0.96.92, will disappear soon
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