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Message #08781
Re: [Dhis2-devs] Exception with Mysql database in version 2.21
Hi Neeraj,
always good to have a bug to link to. I am testing the fix now and will apply to trunk and 2.21. Struggling a but with connectivity working from a training venue in Palestine, but it will be ready soon.
Markus
> 8. des. 2015 kl. 10.48 skrev Neeraj Gupta <neeraj.hisp@xxxxxxxxx>:
>
> Thanks Lars.
>
> Shall I report the bug nn launchpad for this?
>
> On Tue, Dec 8, 2015 at 1:55 PM, Lars Helge Øverland <larshelge@xxxxxxxxx <mailto:larshelge@xxxxxxxxx>> wrote:
> I can see that table programrule has a column "condition" which appears to be a reserved <https://dev.mysql.com/doc/refman/5.5/en/keywords.html> word in mysql.
>
> Will look into it.
>
> Lars
>
> On Tue, Dec 8, 2015 at 7:05 AM, Neeraj Gupta <neeraj.hisp@xxxxxxxxx <mailto:neeraj.hisp@xxxxxxxxx>> wrote:
> Yes, ran all sql scripts.
>
> On Tue, Dec 8, 2015 at 11:34 AM, Knut Staring <knutst@xxxxxxxxx <mailto:knutst@xxxxxxxxx>> wrote:
> But I assume you ran all the Sql update scripts?
>
> On 8 Dec 2015 07:02, "Knut Staring" <knutst@xxxxxxxxx <mailto:knutst@xxxxxxxxx>> wrote:
> ---------- Forwarded message ----------
> From: "Neeraj Gupta" <neeraj.hisp@xxxxxxxxx <mailto:neeraj.hisp@xxxxxxxxx>>
> Date: 8 Dec 2015 06:54
> Subject: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
> To: "Knut Staring" <knutst@xxxxxxxxx <mailto:knutst@xxxxxxxxx>>
> Cc:
>
> Thanks for replying Knut.
>
> We upgraded directly from 2.16 to 2.21. But the errors seems more database related
>
> For example if we see drop _orgunitstructure query, it should be dropped irrespective of versions.
>
> On Mon, Dec 7, 2015 at 6:24 PM, Knut Staring <knutst@xxxxxxxxx <mailto:knutst@xxxxxxxxx>> wrote:
> You upgraded directly? Or step by step (2.17, 2.18...)
>
> On Mon, Dec 7, 2015 at 1:52 PM, Neeraj Gupta <neeraj.hisp@xxxxxxxxx <mailto:neeraj.hisp@xxxxxxxxx>> wrote:
> Dear All,
>
> We recently upgraded DHIS 2.16 to 2.21 where database is Mysql some of the errors are listed below, can someone please guide us?(We are using aggregated data not tracker)
>
> Error1:
> In mysql programrule table is not created automatically. While starting getting the below error:
>
>
> * ERROR 2015-12-07 17:36:56,864 Problem updating: programrule, id column: programruleid (IdentityPopulator.java [localho
> st-startStop-1])
> org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad SQL grammar [SELECT * from programrule WHERE uid
> IS NULL]; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'dhis.programrule'
> doesn't exist
> at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
> lator.java:231)
> at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
> nTranslator.java:73)
> at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
> at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:471)
> at org.springframework.jdbc.core.JdbcTemplate.queryForRowSet(JdbcTemplate.java:526)
> at org.hisp.dhis.common.IdentityPopulator.execute(IdentityPopulator.java:86)
> at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:117)
> at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:86)
> at org.hisp.dhis.system.startup.StartupListener.contextInitialized(StartupListener.java:71)
> at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4729)
> at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5167)
> at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
> at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
> at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
> at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
> at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
> at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1768)
> at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
> at java.util.concurrent.FutureTask.run(Unknown Source)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
> at java.lang.Thread.run(Unknown Source)
> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'dhis.programrule' doesn't exist
> at sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
> at com.mysql.jdbc.Util.getInstance(Util.java:360)
> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
> at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
> at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
> at com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1446)
> at com.mchange.v2.c3p0.impl.NewProxyStatement.executeQuery(NewProxyStatement.java:35)
> at org.springframework.jdbc.core.JdbcTemplate$1QueryStatementCallback.doInStatement(JdbcTemplate.java:455)
> at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
> ... 19 more
> * INFO 2015-12-07 17:36:57,144 Executing startup routine [6 of 13, runlevel 5]: TableCreator (DefaultStartupRoutineExec
> utor.java [localhost-startStop-1])
>
> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>
> Error2: While generating resource tables got the below error, think the query should be DROP TABLE IF EXISTS _orgunitstructure; Same applies for all resource tables.
>
> * INFO 2015-12-07 17:41:06,417 [Level: INFO, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messag
> e: Generating resource tables] (InMemoryNotifier.java [taskScheduler-1])
> * INFO 2015-12-07 17:41:06,465 Create table SQL: create table _orgunitstructure_temp (organisationunitid integer not nu
> ll primary key, organisationunituid character(11), level integer, `idlevel1` integer, `uidlevel1` character(11), `idleve
> l2` integer, `uidlevel2` character(11), `idlevel3` integer, `uidlevel3` character(11)); (JdbcResourceTableStore.java [ta
> skScheduler-1])
> * INFO 2015-12-07 17:41:06,495 Populate table content rows: 203 (JdbcResourceTableStore.java [taskScheduler-1])
> * INFO 2015-12-07 17:41:06,546 Create index SQL: create unique index in_orgunitstructure_organisationunituid_VWU2G on _
> orgunitstructure_temp(organisationunituid) (JdbcResourceTableStore.java [taskScheduler-1])
> * INFO 2015-12-07 17:41:06,582 [Level: ERROR, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messa
> ge: Process failed: StatementCallback; bad SQL grammar [drop table _orgunitstructure;]; nested exception is com.mysql.jd
> bc.exceptions.jdbc4.MySQLSyntaxErrorException: Unknown table 'dhis._orgunitstructure'] (InMemoryNotifier.java [tas
> kScheduler-1])
>
> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>
> Error3: Tried to copy resource table structures from old db and tried generate resource table option, this time got the below error:
>
> * INFO 2015-12-07 18:05:19,296 [Level: ERROR, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 18:05:19 IST 2015, messa
> ge: Process failed: StatementCallback; bad SQL grammar [create unique index in_dataelementstructure_dataelementuid_M86c6
> on _dataelementstructure_temp(dataelementuid);create index in_dataelementstructure_datasetid_fVMFF on _dataelementstruc
> ture_temp(datasetid);create index in_dataelementstructure_datasetuid_nsdEu on _dataelementstructure_temp(datasetuid);cre
> ate index in_dataelementstructure_periodtypeid_EkjZg on _dataelementstructure_temp(periodtypeid);]; nested exception is
> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that c
> orresponds to your MySQL server version for the right syntax to use near 'create index in_dataelementstructure_datasetid
> _fVMFF on _dataelementstructure_te' at line 1] (InMemoryNotifier.java [taskScheduler-5])
> * ERROR 2015-12-07 18:05:19,319 Unexpected error occurred in scheduled task. (TaskUtils.java [taskScheduler-5])
> org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad SQL grammar [create unique index in_dataelements
> tructure_dataelementuid_M86c6 on _dataelementstructure_temp(dataelementuid);create index in_dataelementstructure_dataset
> id_fVMFF on _dataelementstructure_temp(datasetid);create index in_dataelementstructure_datasetuid_nsdEu on _dataelements
> tructure_temp(datasetuid);create index in_dataelementstructure_periodtypeid_EkjZg on _dataelementstructure_temp(periodty
> peid);]; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL sy
> ntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'create index in_d
> ataelementstructure_datasetid_fVMFF on _dataelementstructure_te' at line 1
> at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
> lator.java:231)
> at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
> nTranslator.java:73)
> at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
> at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:440)
> at org.hisp.dhis.resourcetable.jdbc.JdbcResourceTableStore.generateResourceTable(JdbcResourceTableStore.java:118
> )
> at org.hisp.dhis.resourcetable.DefaultResourceTableService.generateDataElementTable(DefaultResourceTableService.
> java:198)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
> at java.lang.reflect.Method.invoke(Unknown Source)
> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:
> 190)
> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
> at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterce
> ptor.java:99)
> at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspec
> tSupport.java:281)
> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
> at com.sun.proxy.$Proxy143.generateDataElementTable(Unknown Source)
> at org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.generateAll(ResourceTableTask.java:121)
> at org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.run(ResourceTableTask.java:84)
> at org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.ja
> va:54)
> at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
> at java.util.concurrent.FutureTask.run(Unknown Source)
> at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(Unknown Source)
> at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
> at java.lang.Thread.run(Unknown Source)
> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the ma
> nual that corresponds to your MySQL server version for the right syntax to use near 'create index in_dataelementstructur
> e_datasetid_fVMFF on _dataelementstructure_te' at line 1
> at sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
> at com.mysql.jdbc.Util.getInstance(Util.java:360)
> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
> at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
> at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
> at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:848)
> at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:742)
> at com.mchange.v2.c3p0.impl.NewProxyStatement.execute(NewProxyStatement.java:1006)
> at org.springframework.jdbc.core.JdbcTemplate$1ExecuteStatementCallback.doInStatement(JdbcTemplate.java:432)
> at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
> ... 26 more
>
>
> --
> Thanks,
> Neeraj Gupta
>
> _______________________________________________
> Mailing list: https://launchpad.net/~dhis2-devs <https://launchpad.net/~dhis2-devs>
> Post to : dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx>
> Unsubscribe : https://launchpad.net/~dhis2-devs <https://launchpad.net/~dhis2-devs>
> More help : https://help.launchpad.net/ListHelp <https://help.launchpad.net/ListHelp>
>
>
>
>
> --
> Knut Staring
> Dept. of Informatics, University of Oslo
> Norway: +4791880522 <tel:%2B4791880522>
> Skype: knutstar
> http://dhis2.org <http://dhis2.org/>
>
>
> --
> Thanks,
> Neeraj Gupta
>
> _______________________________________________
> Mailing list: https://launchpad.net/~dhis2-users <https://launchpad.net/~dhis2-users>
> Post to : dhis2-users@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-users@xxxxxxxxxxxxxxxxxxx>
> Unsubscribe : https://launchpad.net/~dhis2-users <https://launchpad.net/~dhis2-users>
> More help : https://help.launchpad.net/ListHelp <https://help.launchpad.net/ListHelp>
>
>
>
>
> --
> Thanks,
> Neeraj Gupta
>
> _______________________________________________
> Mailing list: https://launchpad.net/~dhis2-users <https://launchpad.net/~dhis2-users>
> Post to : dhis2-users@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-users@xxxxxxxxxxxxxxxxxxx>
> Unsubscribe : https://launchpad.net/~dhis2-users <https://launchpad.net/~dhis2-users>
> More help : https://help.launchpad.net/ListHelp <https://help.launchpad.net/ListHelp>
>
>
>
>
> --
> Lars Helge Øverland
> Lead developer, DHIS 2
> University of Oslo
> Skype: larshelgeoverland
> http://www.dhis2.org <https://www.dhis2.org/>
>
>
>
>
> --
> Thanks,
> Neeraj Gupta
> _______________________________________________
> Mailing list: https://launchpad.net/~dhis2-users
> Post to : dhis2-users@xxxxxxxxxxxxxxxxxxx
> Unsubscribe : https://launchpad.net/~dhis2-users
> More help : https://help.launchpad.net/ListHelp
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