yade-dev team mailing list archive

[Jerome Duriez <jerome.duriez@xxxxxxxxx>]

Hello,

As for jointedCohesiveFrictionalPM, gravityBis.py is working and is 
intended to replace gravityLoading.py + packInGtsSurface.py.

While identificationSpheresOnJoint.py is not supposed to be called for 
itself, and could be replaced by identifBis.py (the latter being used by 
gravityBis.py). I'm reproposing [*] some removal of files (even though I 
won't do it myself in a near future, I still need to catch up with the 
gitlab workflow...)

Jérôme

[*] 
https://gitlab.com/yade-dev/trunk/commit/4788d0eeb50f5606c9f3fd8c9e3dd71987ee885f

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On 24/01/2019 19:09, Bruno Chareyre wrote:
> Hi Janek,
> I went through list_of_examples.txt [1].
> Impressive work, thanks. I just fixed two [2].
>
> My impression is that some examples could be fixed quickly by the 
> original authors, provided that they now the problem (many of them are 
> probably not reading yade-dev). I'm then adding some of them in cc of 
> this email for possible reaction.
>
> Guys, you can fix thoses scripts on github or gitlab, doesn't matter. 
> Please remember to insert your name and email in every script so we 
> know what to do is a case like now.
>
> FEMxDEM: Ning Guo (if this adress does not work I know Ning has 
> successors in HK)
> HydroForceEngine: Raphael MAURIN (postProcessing_sedim.py has a 
> problem + some scripts need move to check scripts (great!))
> jointedCohesiveFrictionalPM:  Luc Scholtès and/or (?) Jérôme Duriez
> OAR:  William Chèvremont  (maybe a few lines in preamble of sim.py to 
> explain why - obviously - it cannot work for Janek, or maybe link back 
> to where it is explained?)
> SPH: Anton, is there somewhere explanation of current state of SPH? Is 
> it something someone could take over one day, or should it be simply 
> removed?
>
> Thanks all.
>
> Bruno
>
> [1] 
> https://gitlab.com/yade-dev/trunk/blob/master/examples/list_of_examples.txt
> [2] 
> https://gitlab.com/yade-dev/trunk/commit/46f718ee2bc3c2198809145f1446865263d1453b
>
>
> On 1/20/19 10:45 PM, Janek Kozicki wrote:
> > Sounds great!
> >
> > You can see more info in file examples/list_of_examples.txt
> > would be great if mark in this file those that you have fixed.
> >
> > it is already merged on gitlab :)
> > https://gitlab.com/yade-dev/trunk/merge_requests/27
> >
> > best regards
> > Janek
> >
> >
> > Jan Stránský said:     (by the date of Sun, 20 Jan 2019 21:44:29 +0100)
> >
> > > Hi Janek,
> > >
> > > thanks for the detailed look :-)
> > >
> > > > If you have any hints on how to fix any of those examples, please 
> > > > tell!
> > > several mentioned not working script is from me. I think than 
> > > correcting
> > > them and pushing to gitlab is better than telling :-)
> > >
> > > > Also I see that https://yade-dem.org/doc/tutorial-examples.html looks
> > > very strange - the youtube videos are not shown
> > >
> > > I don't remember the reason (have read it long time ago), but the 
> > > youtube
> > > videos does work using http (not https) in the address
> > >
> > > cheers
> > > Jan
> > >
> > >
> > >
> > > ne 20. 1. 2019 v 20:27 odesílatel Janek Kozicki <janek_listy@xxxxx> 
> > > napsal:
> > >
> > > > Hi,
> > > >
> > > > I did small or cosmetic fixes in 17 examples.
> > > > Currently 21% of examples (46 out of 215) are broken.
> > > >
> > > > I tried every example in a very quick manner. I checked if it has any
> > > > explanations inside the comments, then I tried to just run it.
> > > > It is possible that some of them failed only because they need a bit
> > > > fiddling before starting them. In that case we need to explain the
> > > > fiddling inside the file, in comments. And tell me what is the 
> > > > fiddling to
> > > > do!
> > > >
> > > > If you have any hints on how to fix any of those examples, please 
> > > > tell!
> > > >
> > > > ResetRandomPosition.py
> > > >   : SIGSEGV/SIGABRT handler called;
> > > >   : gdb [with T = IGeomFunctor; typename
> > > > boost::detail::sp_member_access<T>::type = IGeomFunctor*]: 
> > > > Assertion `px !=
> > > > 0' failed.
> > > >
> > > > DeformEngine/LOedometricDeform.py and OedometricDeform.py
> > > >   : NameError: name 'DeformControl' is not defined
> > > >
> > > > FEMxDEM
> > > >   : ImportError: No module named esys.escript
> > > >   I am reading https://launchpad.net/escript-finley to fix this.
> > > >
> > > > HydroForceEngine/twoWayCoupling/postProcessing_sedim.py
> > > >   : line:49 ValueError: operands could not be broadcast together with
> > > > shapes (900,) (901,) (900,)
> > > >
> > > > LudingPM/LudingPM_1.py and LudingPM_2.py
> > > >   : NewtonIntegrator: NaN force acting on #0.
> > > >
> > > > PotentialBlocks/WedgeYADE.py and cubePBscaled.py
> > > > PotentialParticles/basic.py and cubePPscaled.py
> > > >   : NameError: name 'PotentialBlock2AABB' is not defined
> > > >   I will recompile with ENABLE_POTENTIAL_BLOCKS=ON and see if they 
> > > > work.
> > > >
> > > > agglomerate/simulation.py
> > > >   : AttributeError: 'Body' object has no attribute 'agglomerate'
> > > >
> > > > capillary/liquidmigration/showcase.py
> > > >   : NameError: name 'LiqControl' is not defined
> > > >   I will recompile with LIQMIGRATION  and see if it works.
> > > >
> > > > clumps/save-load-clumps.py
> > > >   : SIGSEGV/SIGABRT handler called; gdb
> > > >   : Assertion `member->isClumpMember()' failed.
> > > >
> > > > deformableelem/Minimal.py
> > > >   : the graphs are empty
> > > >
> > > > deformableelem/main.py
> > > >   : I suppose this file is here by mistake ?
> > > >
> > > > jointedCohesiveFrictionalPM/packInGtsSurface.py and all other files
> > > >   : spams terminal with messages: UnbalancedForce=-nan, rel stress nan
> > > >
> > > > mortar/modelTests/failureEnvelope.py
> > > >   : MortarMat.cpp:12 go: MortarMat not implemented for non-cohesive 
> > > > contacts
> > > >
> > > > oar/sim.py
> > > >   : KeyError: 'Invalid key: description.'
> > > >
> > > > sph/dam_break.py and all other files there
> > > >   : AttributeError: No such attribute: KernFunctionPressure.
> > > >   I will recompile with SPH and see if they work.
> > > >
> > > > test/WireMatPM/net-2part-strain.py
> > > >   : UniaxialStrainer::action(): Assertion 
> > > > `posIds.size()==posCoords.size()
> > > > && negIds.size()==negCoords.size() && originalLength>0 &&
> > > > crossSectionArea>0' failed.
> > > >   : SIGSEGV/SIGABRT handler called; gdb
> > > >
> > > > test/batch/sim.py
> > > >   : KeyError: 'Invalid key: description.'
> > > >
> > > > test/exact-rot-facet.py and exact-rot.py
> > > >   : [with T = IGeomFunctor; typename
> > > > boost::detail::sp_member_access<T>::type = IGeomFunctor*]: 
> > > > Assertion `px !=
> > > > 0' failed.
> > > >   : SIGSEGV/SIGABRT handler called; gdb
> > > >
> > > > test/genCylLSM.py
> > > >   : InsertGenerator3D::seedParticles
> > > >   : bbx: -15 -15 -15 - 15 15 215
> > > >   : SIGSEGV/SIGABRT handler called; gdb batch file is
> > > >
> > > > test/helix.py
> > > >   : script runs and is not crashing, but nothing happens
> > > >
> > > > test/pack-predicates.py
> > > >   : nothing happens, scene is empty
> > > >
> > > > test/paraview-spheres-solid-section/
> > > >   yade export_text.py
> > > >   apt install paraview-python
> > > >   python pv_section.py
> > > >   : Traceback (most recent call last):
> > > >   : File "pv_section.py", line 29, in <module>
> > > >   :   RenderView1.UseInteractiveRenderingForSceenshots = 0
> > > >   : File 
> > > > "/usr/lib/python2.7/dist-packages/paraview/servermanager.py", line
> > > > 307, in __setattr__
> > > >   :   "to add this attribute.")
> > > >   : AttributeError: Attribute UseInteractiveRenderingForSceenshots 
> > > > does not
> > > > exist.  This class does not allow addition of new attributes to avoid
> > > > mistakes due to typos. Use add_attribute() if you really want to 
> > > > add this
> > > > attribute.
> > > >
> > > > test/psd.py
> > > >   : the scene is empty, apparently makeCloud didn't do anything. Or 
> > > > I would
> > > > have to wait longer.
> > > >
> > > > test/qt4-attributes.py and qt4-pyqglviewer.py
> > > >   : Error: already imported an Incompatible QT Binding: pyqt5
> > > >   I will try to convert this to qt5
> > > >
> > > >
> > > > test/remove-body.py
> > > >   : AttributeError: No such attribute: nBins
> > > >
> > > > test/shear.py
> > > >   : sp_member_access<T>::type = IGeomFunctor*: Assertion `px != 0' 
> > > > failed
> > > >   : SIGSEGV/SIGABRT handler called; gdb
> > > >
> > > > test/test_Ip2_FrictMat_CpmMat_FrictPhys.py
> > > >   : After collision there is error: InteractionLoop::action(): 
> > > > Assertion
> > > > `!swap' failed.
> > > >   : SIGSEGV/SIGABRT handler called; gdb
> > > >
> > > > test/unv-read/unvReadVTKExport.py
> > > >   : TypeError: facet() got an unexpected keyword argument 
> > > > 'returnElementMap'
> > > >
> > > >
> > > > triax-tutorial/script-session2.py
> > > >   : AttributeError: No such attribute: sigma1
> > > >
> > > >
> > > >
> > > > Also I see that https://yade-dem.org/doc/tutorial-examples.html looks
> > > > very strange - the youtube videos are not shown. There is no comments
> > > > or explanations. Even the extra wiki pages like those which I
> > > > stumbled upon:
> > > >
> > > > https://yade-dem.org/wiki/CapillaryTriaxialTest
> > > > https://yade-dem.org/wiki/ScriptParametricStudy
> > > >
> > > > are not mentioned at all.
> > > >
> > > > I am not sure how to fix the youtube links, but perhaps I will add
> > > > some more content to this page.
> > > >
> > > > What do you think about copying whose wiki pages into
> > > > yade-dem.org/doc/tutorial-examples.html ?
> > > >
> > > > --
> > > > Janek Kozicki
> > > >
> > > > _______________________________________________
> > > > Mailing list: https://launchpad.net/~yade-dev
> > > > Post to     : yade-dev@xxxxxxxxxxxxxxxxxxx
> > > > Unsubscribe : https://launchpad.net/~yade-dev
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